PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast06G076900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 237aa MW: 26185.4 Da PI: 7.3262 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.3e-19 | 58 | 111 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+e Le F+++r++ + ++ +LA++lgL+ +qV vWFqNrRa++k Brast06G076900.1.p 58 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 111 45589***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 115.7 | 2.8e-37 | 58 | 147 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrls+eqv++LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a++a ++++Le+ev +L+e+l Brast06G076900.1.p 58 KKRRLSDEQVEMLELSFREERKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKHAHEAAILHKCHLENEVLRLKERL 147 9**************************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 4.9E-17 | 56 | 117 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.96E-16 | 58 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-18 | 58 | 111 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.28E-16 | 58 | 112 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.7E-16 | 58 | 111 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.001 | 58 | 113 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.2E-5 | 84 | 93 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 88 | 111 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 93 | 109 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDKQELFASY YVDTSFLGAN GAAAAQGERP RARRRRRRAA AAARCDDVDG GSLLLDPKKR 60 RLSDEQVEML ELSFREERKL ETGRKVHLAA ELGLDPKQVA VWFQNRRARH KSKLLEEEFA 120 KLKHAHEAAI LHKCHLENEV LRLKERLGVI EEEVRRLRSA GSCHAASGDG AAHHGSPSSS 180 FSAGTCHQQQ QPGLSGGADV MPGNDDLMTM YVPDAEYGGP YADTNVAEWF SLYGLM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 28 | 37 | RPRARRRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast06G076900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK121889 | 1e-139 | AK121889.1 Oryza sativa Japonica Group cDNA clone:J033105B17, full insert sequence. | |||
GenBank | AY559047 | 1e-139 | AY559047.1 Oryza sativa (japonica cultivar-group) homeodomain leucine zipper protein 14 (hox14) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562820.1 | 1e-143 | homeobox-leucine zipper protein HOX14 | ||||
Swissprot | A2YN17 | 5e-85 | HOX14_ORYSI; Homeobox-leucine zipper protein HOX14 | ||||
TrEMBL | I1GT02 | 1e-142 | I1GT02_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G23460.1 | 1e-143 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 4e-39 | homeobox protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Brast06G076900.1.p |