PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast06G009100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 294aa MW: 32182.6 Da PI: 7.57

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast06G009100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.9	5.7e-51	26	155	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lp+GfrFhPtdee+v++yL++k+ + ++ + vi +vd++++ePw+Lp k+k +ekew+fF+++ +ky+tg+r+nrat+sgyWkatg+d+e Brast06G009100.1.p 26 LPAGFRFHPTDEEVVTHYLTPKALDGRFAC-VVIGDVDLNRSEPWELPGKAKMGEKEWFFFVHKGRKYPTGTRTNRATESGYWKATGRDRE 115 799**********************999.78***********99999********************************** PP NAM 92 vlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ ++ lvglkktLvfy grap+g+kt Wvmhe+rl Brast06G009100.1.p 116 IFRGrgrSQVLVGLKKTLVFYLGRAPRGKKTPWVMHEFRL 155 985545555***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-60	21	179	IPR003441	NAC domain
PROSITE profile	PS51005	56.2	26	179	IPR003441	NAC domain
Pfam	PF02365	7.0E-26	27	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MSDVTAVMDL GAAAPAAPRR RQQLDLPAGF RFHPTDEEVV THYLTPKALD GRFACVVIGD 60 VDLNRSEPWE LPGKAKMGEK EWFFFVHKGR KYPTGTRTNR ATESGYWKAT GRDREIFRGR 120 GRSQVLVGLK KTLVFYLGRA PRGKKTPWVM HEFRLDGQLP ANLPPSAKDE WAVCRVFNKD 180 MAAAAKAAPA PAPQMAEAAA AMGMERSDSI ADFLDGFLLE QLPPLMDSPF DGASLEVKAE 240 QQNPSSSYFS LPAASTRAAG GDMGTASSSS SKLYLGLDDL DPLMDFSNDM WKF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-49	23	183	14	169	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-49	23	183	14	169	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-49	23	183	14	169	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-49	23	183	14	169	NO APICAL MERISTEM PROTEIN
3swm_A	1e-49	23	183	17	172	NAC domain-containing protein 19
3swm_B	1e-49	23	183	17	172	NAC domain-containing protein 19
3swm_C	1e-49	23	183	17	172	NAC domain-containing protein 19
3swm_D	1e-49	23	183	17	172	NAC domain-containing protein 19
3swp_A	1e-49	23	183	17	172	NAC domain-containing protein 19
3swp_B	1e-49	23	183	17	172	NAC domain-containing protein 19
3swp_C	1e-49	23	183	17	172	NAC domain-containing protein 19
3swp_D	1e-49	23	183	17	172	NAC domain-containing protein 19
4dul_A	1e-49	23	183	14	169	NAC domain-containing protein 19
4dul_B	1e-49	23	183	14	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast06G009100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003559780.1	1e-159	NAC domain-containing protein 92
Swissprot	Q9FK44	1e-78	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	I1GR19	1e-158	I1GR19_BRADI; Uncharacterized protein
STRING	BRADI1G17440.1	1e-159	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	4e-79	NAC domain containing protein 80

Link Out ? help Back to Top
Phytozome	Brast06G009100.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]