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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G296500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | LBD | ||||||||
Protein Properties | Length: 191aa MW: 20513.2 Da PI: 6.9893 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137.4 | 5.2e-43 | 13 | 113 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +Ca+Ck+lrr+Ca+dCv+apyfp e+p++fa vh++FGasnv+k+l++lp +r da+sslvyeA arardPvyG++g i+ lq+q++ql+ Brast05G296500.1.p 13 PCASCKLLRRRCARDCVFAPYFPPEDPARFATVHRVFGASNVSKMLQELPAAQRADAVSSLVYEATARARDPVYGCAGAISYLQHQVAQLQ 103 7****************************************************************************************** PP DUF260 92 aelallkeel 101 ++la++++++ Brast05G296500.1.p 104 VQLAVAQAQI 113 *****99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.389 | 12 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.2E-43 | 13 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MAGAQGGGSS STPCASCKLL RRRCARDCVF APYFPPEDPA RFATVHRVFG ASNVSKMLQE 60 LPAAQRADAV SSLVYEATAR ARDPVYGCAG AISYLQHQVA QLQVQLAVAQ AQILHRVHPP 120 PSSSSPSPAP PLPLHDLQQL QQQQSLQMDY DYDDDVKAGY GSGLVTQNDL MNSLLLQEAC 180 CGLKKESLWT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-45 | 9 | 114 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-45 | 9 | 114 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G296500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238823.1 | 1e-105 | LOB domain-containing protein 4 | ||||
Swissprot | Q8LBW3 | 2e-60 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A2K2CU80 | 1e-104 | A0A2K2CU80_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G44850.1 | 1e-104 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP882 | 38 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 2e-51 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast05G296500.1.p |
Publications ? help Back to Top | |||
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