PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G291200.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 309aa    MW: 33211.1 Da    PI: 7.7647
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G291200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.35.5e-22118181359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEE....EEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvv....eitYegeHnhe 59 
                         Dg++WrKYGqK+++ +++prsYYrCt +   gCp+k+ v+r+++d++      + +Y +eH+++
  Brast05G291200.1.p 118 DGFRWRKYGQKHIEAAKYPRSYYRCTNStdqGCPAKRTVQRNEDDGTKAapkyTLVYISEHTCT 181
                         9*************************988889*************9865222267788888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-23107181IPR003657WRKY domain
SuperFamilySSF1182903.14E-20109181IPR003657WRKY domain
SMARTSM007746.6E-28116182IPR003657WRKY domain
PfamPF031061.7E-22118180IPR003657WRKY domain
PROSITE profilePS5081119.347118171IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MLDMMLPAPE KEMLQRRERE LLAQLHELLY SPSSSSSSLS SSPPPSSGAG EPSCWTSSSL  60
SGGGSGRGSK KRADHREEEI VQMQEKRGGS KAKRRKKKKE AAGGAATRTL VTTVPDFDGF  120
RWRKYGQKHI EAAKYPRSYY RCTNSTDQGC PAKRTVQRNE DDGTKAAPKY TLVYISEHTC  180
TTTDSALVPP VILETAAACG VVVPATSSSR SDVTSSPVSS SDATTWSEHH GCSSMFAIDD  240
DKLDSRWGPS NTSTVALPSA AALLAQEMVD FAGPIRSPVH VSTGGDWIND FFVGEPPCVL  300
NSCHLFGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-161181801068OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19298KRRKKKK
29399RRKKKKE
39499RKKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G291200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238804.11e-118probable WRKY transcription factor 29
TrEMBLA0A0Q3J2J61e-116A0A0Q3J2J6_BRADI; Uncharacterized protein
STRINGBRADI4G44342.11e-111(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-16WRKY DNA-binding protein 70