PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G287600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 397aa    MW: 43135.5 Da    PI: 6.2871
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G287600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.84.5e-49141481128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         lppGfrFhPtd el+++yL+++ +++++++  +i+ev+iy+++Pw+Lp k  + a++ ew+fFs+rd+ky++g r+nra+ +gyWkatg+d
  Brast05G287600.1.p  14 LPPGFRFHPTDAELITHYLANQSSSSPIPA-PIIAEVNIYRSNPWELPaKaLFGARDGEWFFFSPRDRKYPNGARPNRAAGDGYWKATGTD 103
                         79****************************.88***************5334555777********************************* PP

                 NAM  90 kevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k+++s       +g+ vg+kk Lvfy+g+ p+g+ktdW+mheyrl
  Brast05G287600.1.p 104 KPITSDsasgssSGAIVGVKKALVFYRGKPPRGVKTDWIMHEYRL 148
                         *****87777666667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-609180IPR003441NAC domain
PROSITE profilePS5100558.95514180IPR003441NAC domain
PfamPF023653.7E-2515148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MAPPPQNAAA MPSLPPGFRF HPTDAELITH YLANQSSSSP IPAPIIAEVN IYRSNPWELP  60
AKALFGARDG EWFFFSPRDR KYPNGARPNR AAGDGYWKAT GTDKPITSDS ASGSSSGAIV  120
GVKKALVFYR GKPPRGVKTD WIMHEYRLAS SSSSSGKRRS SAGSSSMRLD DWVLCRIHKK  180
SSNGSTNLHN FVSSSSEHEQ EESSTVEESS MNNNNNNTNM SSPKSEAFDG GDKEELQELR  240
PMAIAKSCSI TDLLNTVDYA SLLLDGAADA PAYHHDQLPA PETTDQESAL IYTPPNPWQT  300
INCSNINNSS LSYLNDDAIA VPQLAEQGYY YHSNGDQYVN GGAVKRKRPT SGSYCNQLQV  360
NGDLQVAGGN NSSSNGFEYS GMLIHPFLMN NHQLQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-7161837171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321). {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G287600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577115.10.0NAC domain-containing protein 67
SwissprotA0SPJ36e-77NAMA1_TRITD; NAC transcription factor NAM-A1
SwissprotQ84TD62e-77NAC47_ARATH; NAC transcription factor 47
TrEMBLI1IUV90.0I1IUV9_BRADI; Uncharacterized protein
STRINGBRADI4G44000.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-62NAC domain containing protein 47
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]
  2. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]