PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G287500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 378aa    MW: 40593.2 Da    PI: 4.184
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G287500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.62.9e-24159047128
                 NAM  47 LpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         L       ekewyfF+++  ky+tg+r+nrat++gyWka g+d  ++   ++elvg+ +t vfy grap g+k  Wvmhe+rl
  Brast05G287500.1.p  15 L-------EKEWYFFMQKGLKYPTGSRANRATREGYWKAMGRDWGIFGGgTRELVGMNNTVVFYMGRAPAGVKIVWVMHEFRL 90 
                         3.......589************************************9866778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.5681114IPR003441NAC domain
SuperFamilySSF1019414.18E-292114IPR003441NAC domain
PfamPF023654.5E-14290IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MDEEAIIYYL LPKFLEKEWY FFMQKGLKYP TGSRANRATR EGYWKAMGRD WGIFGGGTRE  60
LVGMNNTVVF YMGRAPAGVK IVWVMHEFRL HGKTGDQIVN NAKDEWVVCK VFNKGPDGQD  120
GVAKPLANSD SVGADELDID GSAELDLSGV DGYNLEFDSI PEFDQELRNY IKDEDPFTSY  180
ELNENHQLPD ANTMTNTATI DAPPPYNMDC DSYSIPTAAG MPSFYNAMGM IMPNYSLTNN  240
AAISSIQQGS NAAASSLPGS SSGAGASSSW NMLQNLPNYG MGHGRSFFDG ISLQDEQAIM  300
ADTLGGLLSG AGPSSFVMPE VGSLPLSSSV ALIAGFPPPQ ATNMEIYDDG GYPSYGIYAP  360
APDAAAGAAK DFGGRLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-221411968170NO APICAL MERISTEM PROTEIN
1ut4_B1e-221411968170NO APICAL MERISTEM PROTEIN
1ut7_A1e-221411968170NO APICAL MERISTEM PROTEIN
1ut7_B1e-221411968170NO APICAL MERISTEM PROTEIN
4dul_A1e-221411968170NAC domain-containing protein 19
4dul_B1e-221411968170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G287500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318518.10.0NAC domain-containing protein 77-like
TrEMBLA0A0Q3EYP30.0A0A0Q3EYP3_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39610.13e-36NAC domain containing protein 6