PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G284000.6.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 735aa    MW: 82639.3 Da    PI: 6.3253
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G284000.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS385.27.6e-1183597301374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++ L++cA+av+++d + a++lL+++++++  +gd  qRla++f+++L+arla+++s+ y+ l +++t+    s+ l+a++l+  ++P+ 
  Brast05G284000.6.p 359 LRTILIHCAQAVAADDRRTANELLKQIKQHSKVNGDGSQRLAFCFAQGLEARLAGTGSQQYHRLVAKRTT---ASDMLKAYHLYLAACPFK 446
                         5789************************************************************999999...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         ++sh++ Nq+Il  ++++++vHiiDf+i  GlQWp+L++ L++R++gpp+lRiTg++ pe+g   +e++eetg+rL+++Ae+lgvpfe++ 
  Brast05G284000.6.p 447 RLSHFLSNQTILSMTKNASTVHIIDFGIYFGLQWPCLIRRLSKREGGPPKLRITGIDVPEPGfrPTERIEETGQRLEEYAERLGVPFEYHG 537
                         *************************************************************9***************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a+++e+++ e+L+v ++E+++Vn+ ++  +l de+v+++s+r++vL+++++++P ++++   + +++ + F +rf eal ++salfd+l
  Brast05G284000.6.p 538 -IASKWETIRAEDLKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDML 627
                         .7***************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         ea++pr++++r+ +Er l+gre+ nv+aceg++r+er et+++W+ r  +aGF + pl+++++++ak  ++ ++ + + ++e+sg+l++gW
  Brast05G284000.6.p 628 EATVPRDDDQRRLIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQEIVAKAKVKVKDIYHKDFVIDEDSGWLLQGW 718
                         **************************************************************************888************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         k+r +++++ W+
  Brast05G284000.6.p 719 KGRIIYAITTWK 730
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.482333710IPR005202Transcription factor GRAS
PfamPF035142.6E-115359730IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MQSGPVEQHQ SISGSLIHSM IQFCGAPEYF MFNDPQPVIP PQMAAQPSPS LPVAAALSRA  60
TNNETDNPED WEFISDESLN YISRMLMEED IDEKVSMYQE ESAMLRATAK PFYDILGHKF  120
PPSPDRNLSS WSLDSPGESS SSSHAQSLSS VVTSCSSGAV EDSNQSHNIG HCEQLEAYRG  180
LRGQSFQPLV SPSSGVSNAA EALEDPLITN GRIPEYLFES LPNWDFRRGV EEAQKFLPTG  240
DKLVIDLEAA DVSKSQEPGK DIPLNGSKPE VLNAKKNRQS EDLDLIEGRS IKQSAFCSDE  300
PDWIEMFDGL LRQTEQKATV LREKMRTEAS KNSQVTQTKA TTGVRTRGRK PTKNDVVDLR  360
TILIHCAQAV AADDRRTANE LLKQIKQHSK VNGDGSQRLA FCFAQGLEAR LAGTGSQQYH  420
RLVAKRTTAS DMLKAYHLYL AACPFKRLSH FLSNQTILSM TKNASTVHII DFGIYFGLQW  480
PCLIRRLSKR EGGPPKLRIT GIDVPEPGFR PTERIEETGQ RLEEYAERLG VPFEYHGIAS  540
KWETIRAEDL KVGKDEVVIV NCLYRFRNLI DETVAVDSPR NRVLNTIRQV NPAIFIHGIV  600
NGSYSVPFFI TRFREALFHF SALFDMLEAT VPRDDDQRRL IERDLFGREA LNVIACEGSD  660
RVERPETYKQ WQVRNLRAGF VQSPLNQEIV AKAKVKVKDI YHKDFVIDED SGWLLQGWKG  720
RIIYAITTWK PNNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-513637308375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G284000.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3627960.0AK362796.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577096.10.0scarecrow-like protein 9
RefseqXP_010238778.10.0scarecrow-like protein 9
RefseqXP_024318771.10.0scarecrow-like protein 9
TrEMBLI1IUS30.0I1IUS3_BRADI; Uncharacterized protein
STRINGBRADI4G43680.20.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14