PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G284000.4.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 780aa    MW: 87139.4 Da    PI: 6.6995
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G284000.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3858.8e-1184047751374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         l++ L++cA+av+++d + a++lL+++++++  +gd  qRla++f+++L+arla+++s+ y+ l +++t+    s+ l+a++l+  ++P+ 
  Brast05G284000.4.p 404 LRTILIHCAQAVAADDRRTANELLKQIKQHSKVNGDGSQRLAFCFAQGLEARLAGTGSQQYHRLVAKRTT---ASDMLKAYHLYLAACPFK 491
                         5789************************************************************999999...9***************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                         ++sh++ Nq+Il  ++++++vHiiDf+i  GlQWp+L++ L++R++gpp+lRiTg++ pe+g   +e++eetg+rL+++Ae+lgvpfe++ 
  Brast05G284000.4.p 492 RLSHFLSNQTILSMTKNASTVHIIDFGIYFGLQWPCLIRRLSKREGGPPKLRITGIDVPEPGfrPTERIEETGQRLEEYAERLGVPFEYHG 582
                         *************************************************************9***************************** PP

                GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                          +a+++e+++ e+L+v ++E+++Vn+ ++  +l de+v+++s+r++vL+++++++P ++++   + +++ + F +rf eal ++salfd+l
  Brast05G284000.4.p 583 -IASKWETIRAEDLKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDML 672
                         .7***************************************************************************************** PP

                GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                         ea++pr++++r+ +Er l+gre+ nv+aceg++r+er et+++W+ r  +aGF + pl+++++++ak  ++ ++ + + ++e+sg+l++gW
  Brast05G284000.4.p 673 EATVPRDDDQRRLIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQEIVAKAKVKVKDIYHKDFVIDEDSGWLLQGW 763
                         **************************************************************************888************** PP

                GRAS 363 kdrpLvsvSaWr 374
                         k+r +++++ W+
  Brast05G284000.4.p 764 KGRIIYAITTWK 775
                         ***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.482378755IPR005202Transcription factor GRAS
PfamPF035143.0E-115404775IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MASTPQPPRG DLAAPPPAAA AQDLAALGLA AARSLRHRPP RHGGQMQSGP VEQHQSISGS  60
LIHSMIQFCG APEYFMFNDP QPVIPPQMAA QPSPSLPVAA ALSRATNNET DNPEDWEFIS  120
DESLNYISRM LMEEDIDEKV SMYQEESAML RATAKPFYDI LGHKFPPSPD RNLSSWSLDS  180
PGESSSSSHA QSLSSVVTSC SSGAVEDSNQ SHNIGHCEQL EAYRGLRGQS FQPLVSPSSG  240
VSNAAEALED PLITNGRIPE YLFESLPNWD FRRGVEEAQK FLPTGDKLVI DLEAADVSKS  300
QEPGKDIPLN GSKPEVLNAK KNRQSEDLDL IEGRSIKQSA FCSDEPDWIE MFDGLLRQTE  360
QKATVLREKM RTEASKNSQV TQTKATTGVR TRGRKPTKND VVDLRTILIH CAQAVAADDR  420
RTANELLKQI KQHSKVNGDG SQRLAFCFAQ GLEARLAGTG SQQYHRLVAK RTTASDMLKA  480
YHLYLAACPF KRLSHFLSNQ TILSMTKNAS TVHIIDFGIY FGLQWPCLIR RLSKREGGPP  540
KLRITGIDVP EPGFRPTERI EETGQRLEEY AERLGVPFEY HGIASKWETI RAEDLKVGKD  600
EVVIVNCLYR FRNLIDETVA VDSPRNRVLN TIRQVNPAIF IHGIVNGSYS VPFFITRFRE  660
ALFHFSALFD MLEATVPRDD DQRRLIERDL FGREALNVIA CEGSDRVERP ETYKQWQVRN  720
LRAGFVQSPL NQEIVAKAKV KVKDIYHKDF VIDEDSGWLL QGWKGRIIYA ITTWKPNNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-504087758375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G284000.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3627960.0AK362796.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2010C13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577096.10.0scarecrow-like protein 9
RefseqXP_010238778.10.0scarecrow-like protein 9
RefseqXP_024318771.10.0scarecrow-like protein 9
TrEMBLI1IUS30.0I1IUS3_BRADI; Uncharacterized protein
STRINGBRADI4G43680.20.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14