PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G280400.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 387aa MW: 42033.1 Da PI: 4.2168

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G280400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	56.5	9.4e-18	11	137	5	128
NAM 5 frFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgk 88 +rF+ t e v ++L + ++g++l+ +e i+++diy ++eP+dL + + ka+++ +fF+ +++++ + +r+ r++ +g+W + k Brast05G280400.1.p 11 CRFDLTPLEAVAYFLPRLLSGETLHGAERfIHRADIYgNLEPKDLAAafppANKADRTgARFFFTLSKRQKGSRSRSARSAGAGTWTIQ-K 100 6999999**************7765555**9456*8446653334444366*********************965.7 PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++++ g ++g k L f ++++ e++ Wvm+eyr Brast05G280400.1.p 101 TIDIYDEAGVKKGEEKKLSFKSKDK---ESSGWVMEEYRC 137 79**************84433...469*****95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	18.804	7	157	IPR003441	NAC domain
Pfam	PF02365	1.6E-9	11	136	IPR003441	NAC domain
SuperFamily	SSF101941	2.48E-17	12	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MELDMEVFAL CRFDLTPLEA VAYFLPRLLS GETLHGAERF IHRADIYGNL EPKDLAAAFP 60 PANKADRTGA RFFFTLSKRQ KGSRSRSARS AGAGTWTIQK TIDIYDEAGV KKGEEKKLSF 120 KSKDKESSGW VMEEYRCLLP EAVVEDGEMV LCKIHLSHSA CSKKARQRSA AHRLSGSQGQ 180 EDQPAPMAAA TAKRPAPVAS HDPPCAKRAR VAAAEADHSQ DMDGFRSSLE DLVAEQDEPA 240 ADGMDGRFSC TMEELLGGAA TDEEQQDATL LPAVEAELQM VDFDFNLDDL PVLDDDALGE 300 IMLSLDDEAP TSLPALDDGD LLSLPAVEAE QLRGVDLPIA SDEGFDFELP TDEELDAMIS 360 HLQENWPVSF APDGDLVRIP GLPAVL*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MELDMEVFAL CRFDLTPLEA VAYFLPRLLS GETLHGAERF IHRADIYGNL EPKDLAAAFP  60
PANKADRTGA RFFFTLSKRQ KGSRSRSARS AGAGTWTIQK TIDIYDEAGV KKGEEKKLSF  120
KSKDKESSGW VMEEYRCLLP EAVVEDGEMV LCKIHLSHSA CSKKARQRSA AHRLSGSQGQ  180
EDQPAPMAAA TAKRPAPVAS HDPPCAKRAR VAAAEADHSQ DMDGFRSSLE DLVAEQDEPA  240
ADGMDGRFSC TMEELLGGAA TDEEQQDATL LPAVEAELQM VDFDFNLDDL PVLDDDALGE  300
IMLSLDDEAP TSLPALDDGD LLSLPAVEAE QLRGVDLPIA SDEGFDFELP TDEELDAMIS  360
HLQENWPVSF APDGDLVRIP GLPAVL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G280400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010239527.1	1e-159	uncharacterized protein LOC104585199
TrEMBL	A0A0Q3HVP8	1e-158	A0A0Q3HVP8_BRADI; Uncharacterized protein (Fragment)
STRING	BRADI4G43020.1	1e-159	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1832	27	99

Link Out ? help Back to Top
Phytozome	Brast05G280400.1.p