PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G276100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 369aa MW: 40264.1 Da PI: 4.189

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G276100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	58.9	1.7e-18	7	134	5	128
NAM 5 frFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgk 88 +rF+ t e v ++L + ++g++l+ +e i+++diy ++eP+dL + + ka+++ +fF+ +++++ + +r+ r++ +g+W + k Brast05G276100.1.p 7 CRFDLTPLEAVAYFLPRLLSGETLHGAERfIHRADIYgNLEPKDLAAafppANKADRTgARFFFTLSKRQKGSRSRSARSAGAGTWTIQ-K 96 6999999**************7765555**9456*8446653334444366*********************965.7 PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ ++ g +vg k L f +++++ e++ Wvm+eyr Brast05G276100.1.p 97 TIDINDEAGVKVGEEKKLSFKSKKDK--ESSGWVMEEYRC 134 7999**********955555..59******95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	19.542	3	154	IPR003441	NAC domain
Pfam	PF02365	5.0E-10	7	133	IPR003441	NAC domain
SuperFamily	SSF101941	1.07E-17	8	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MEVFALCRFD LTPLEAVAYF LPRLLSGETL HGAERFIHRA DIYGNLEPKD LAAAFPPANK 60 ADRTGARFFF TLSKRQKGSR SRSARSAGAG TWTIQKTIDI NDEAGVKVGE EKKLSFKSKK 120 DKESSGWVME EYRCLLPEAV VEDGEMVLCK IHLSHSACSK KARQRSAARR LSGSQEQEGH 180 TAPMPEVTAK RPAPAASDDH DPPCAKRSRV DDAQDEAAVE AADNMMDGRF SCTMEELLGG 240 AATDEEQQDA TLLPAVEAEQ QMVDFDFNFD DLPVLDDDVL GEIMLSLDDE APMSLPALDD 300 GDLVSLPAVE AEQLRGVDLP IASDEGFDFE LPTDEELDAM ISQLQENWPV SFVPDGDLVS 360 FPGLPAVL*

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MEVFALCRFD LTPLEAVAYF LPRLLSGETL HGAERFIHRA DIYGNLEPKD LAAAFPPANK  60
ADRTGARFFF TLSKRQKGSR SRSARSAGAG TWTIQKTIDI NDEAGVKVGE EKKLSFKSKK  120
DKESSGWVME EYRCLLPEAV VEDGEMVLCK IHLSHSACSK KARQRSAARR LSGSQEQEGH  180
TAPMPEVTAK RPAPAASDDH DPPCAKRSRV DDAQDEAAVE AADNMMDGRF SCTMEELLGG  240
AATDEEQQDA TLLPAVEAEQ QMVDFDFNFD DLPVLDDDVL GEIMLSLDDE APMSLPALDD  300
GDLVSLPAVE AEQLRGVDLP IASDEGFDFE LPTDEELDAM ISQLQENWPV SFVPDGDLVS  360
FPGLPAVL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G276100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010239527.1	1e-167	uncharacterized protein LOC104585199
TrEMBL	A0A0Q3HVP8	1e-166	A0A0Q3HVP8_BRADI; Uncharacterized protein (Fragment)
STRING	BRADI4G43020.1	1e-167	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1832	27	99

Link Out ? help Back to Top
Phytozome	Brast05G276100.1.p