PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G253000.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 453aa MW: 49632.5 Da PI: 4.8988

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G253000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	48.7	2.4e-15	41	176	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk.....kvkaeekewyfFskrdkkya.......tgkrknr.a 77 lppG+ F+Pt +e v L++ ++g++l+++ + d+y + P++L++ +v++++++w+f + ++ +++ +r+ r + Brast05G253000.1.p 41 LPPGVYFSPTRDESV-GILNRWIAGEPLHETLGfVFVEDVYGSSPEELRRryppaCVRGRKHSWWFLCDTRFQSSkkppapgARRRADRrV 130 79***********.67*****76644426666******7446777888888899999987766553344444223555548 PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 ++ gyW+ + k++ + + g+k+ + fy g k kt W+++e++ Brast05G253000.1.p 131 ATGGYWRLEQSRKDIPV----AGGVKNCFGFYLGPGGKRAKTPWLVEEFT 176 889********99....679******999999******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-17	36	196	IPR003441	NAC domain
PROSITE profile	PS51005	20.515	41	197	IPR003441	NAC domain
Pfam	PF02365	3.1E-9	42	176	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MAIKNKNRKK RASAAAAAAS SAVVSSSAAP PPAHPLQPPP LPPGVYFSPT RDESVGILNR 60 WIAGEPLHET LGFVFVEDVY GSSPEELRRR YPPACVRGRK HSWWFLCDTR FQSSKKPPAP 120 GARRRADRRV ATGGYWRLEQ SRKDIPVAGG VKNCFGFYLG PGGKRAKTPW LVEEFTSARD 180 DGAGKGGQPA LYRLYVTPRS TNDVVREIFG EDGIEWAGGV KRPMRVEVPA QLFDAVAGLL 240 PHGRVRYRPP AQQHPPPPPP ALLDYEPQAQ GHFFSGAGLL PGQYDYEQQF WGVAPPPEGV 300 LLGQYDYEQQ QFWGLPPPQP PPLASPGAPG EIPEGDLGQY EEQFFSEDAQ PPPPQPPPAS 360 PGPCPEIPAG ELVRYGDERH DDQLLSPPAS PGLLLENLAD NMSVSWDELS QLFEKNQAEA 420 EKPAAEEEAE KAQEFDSLVN IVDDFERFSQ ND*

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MAIKNKNRKK RASAAAAAAS SAVVSSSAAP PPAHPLQPPP LPPGVYFSPT RDESVGILNR  60
WIAGEPLHET LGFVFVEDVY GSSPEELRRR YPPACVRGRK HSWWFLCDTR FQSSKKPPAP  120
GARRRADRRV ATGGYWRLEQ SRKDIPVAGG VKNCFGFYLG PGGKRAKTPW LVEEFTSARD  180
DGAGKGGQPA LYRLYVTPRS TNDVVREIFG EDGIEWAGGV KRPMRVEVPA QLFDAVAGLL  240
PHGRVRYRPP AQQHPPPPPP ALLDYEPQAQ GHFFSGAGLL PGQYDYEQQF WGVAPPPEGV  300
LLGQYDYEQQ QFWGLPPPQP PPLASPGAPG EIPEGDLGQY EEQFFSEDAQ PPPPQPPPAS  360
PGPCPEIPAG ELVRYGDERH DDQLLSPPAS PGLLLENLAD NMSVSWDELS QLFEKNQAEA  420
EKPAAEEEAE KAQEFDSLVN IVDDFERFSQ ND*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G253000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024310931.1	1e-172	cleavage and polyadenylation specificity factor subunit 6-like
TrEMBL	I1ITX5	1e-179	I1ITX5_BRADI; Uncharacterized protein
STRING	BRADI4G41200.1	1e-179	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13570	17	24

Link Out ? help Back to Top
Phytozome	Brast05G253000.1.p