PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G205700.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Nin-like
Protein Properties Length: 844aa    MW: 92652.9 Da    PI: 7.196
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G205700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.85e-29527577252
              RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                         ek++sl++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++
  Brast05G205700.2.p 527 EKTVSLQVLRQYFAGSLKDAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 577
                         799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.484516597IPR003035RWP-RK domain
PfamPF020421.7E-25529577IPR003035RWP-RK domain
SuperFamilySSF542771.05E-20735830No hitNo description
Gene3DG3DSA:3.10.20.2407.5E-24743826No hitNo description
SMARTSM006666.0E-18745828IPR000270PB1 domain
PROSITE profilePS5174520.308745828IPR000270PB1 domain
PfamPF005647.8E-15746826IPR000270PB1 domain
CDDcd064071.28E-41746826No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MEEGDAHPSI SVARTASSEG AAVDFDLLEQ LLSGDNAWLE VATNASRSTN FFASPSTFLS  60
DATTTTTTPA SANNNFWIQS SSTFRQRLDQ ALAYIKETQR DTDVLVQLWL PVKSNDGQLV  120
LTTSGQPFTL DKSSDSLKQF RDVSTHYQFS ADVASESSPV GLPGRVFIGK LPEWSPDVRY  180
FTSYEYPRVN HAQNLDVHGT MGLPVFEKGN YSCLGVMELI MTRQKLNFTS EINNICSALQ  240
AVNLRSTEVS SIPRTKFNSA SYKDALPEIL DVLRAACITH KLPLAQTWVT CDQQGKRGSR  300
HSDENYRYCI STIDAACYVN DPRMQNFHYS CSEHHLLRGQ GVAGKAFTTN QPCFLPDIGS  360
STKLEYPLSH HAKIFNLKGA VAIRLRCTRT GTADFVLEFF LPTDCEALEE QKELLDSLSG  420
TMRSVCQTLR VVTDKEMEDE AMLEMNELNS FGPQGKNKVQ ELSFGGKATE HREEASWTSL  480
AGTSQRESDL AELSIHGMLS PGGPGSSLAG VQTTAQGSKG KRRTKTEKTV SLQVLRQYFA  540
GSLKDAAKNL GVCPTTLKRI CRQHGINRWP SRKIKKVDHS LRKLQQIIDS VHGGETAFQL  600
NTLYKDLTNT SVSSDNNLSG SITVPLTKES NLTEFEKHRH HRLSNNVPST SHSHSSCSQS  660
SDSSPSCSGG ATKDSPPAGV DLMKSGSPVR HNPIQTLQAE NASINGHISV QEATGDLLHN  720
INQNAIGGQH PSRSPSHPKQ NSDVGMRVKA TFGSEKVRFR LKPECGFQEL KQEMARRLSI  780
VDTSSLIVKY LDDDSEWVLM TCDADLQECL HVYKLANIQT VKISIHLAAG PETKVTVGHT  840
GLS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G205700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578585.10.0protein NLP1 isoform X3
RefseqXP_014758418.10.0protein NLP1 isoform X2
TrEMBLI1ISJ60.0I1ISJ6_BRADI; Uncharacterized protein
STRINGBRADI4G37147.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein