PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G202900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 1375aa    MW: 155168 Da    PI: 7.4839
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G202900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.32.8e-2210991159259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                          dDg+ WrKYGqK+  g++++r YYrCt++   gC++ k+v+r++ +p +++++Y g+H+++
  Brast05G202900.1.p 1099 DDGFIWRKYGQKDSLGAKYSRDYYRCTHRhsrGCQAMKQVQRTDGNPLLFDVMYAGHHTCT 1159
                          7***************************99999**************************97 PP
2WRKY81.49.2e-2612091270159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59  
                          ldDg++WrKYGqK+v g ++pr+YYrC ++   gCp++k+v+r+++dp++++++Y+geH + 
  Brast05G202900.1.p 1209 LDDGFRWRKYGQKDVLGFKYPRAYYRCLYRqqqGCPATKQVQRTDSDPQLFDVVYHGEHICA 1270
                          59*************************9988889*************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd147987.92E-923146No hitNo description
SuperFamilySSF525404.53E-57179446IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009314.9E-52194472IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3001.4E-15199325IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003643.7E-16211226No hitNo description
PRINTSPR003643.7E-16283297No hitNo description
PRINTSPR003643.7E-16380394No hitNo description
SuperFamilySSF520585.27E-23511880IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.107.4E-16540747IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS514507.057686707IPR001611Leucine-rich repeat
PRINTSPR003643.7E-16736752No hitNo description
Gene3DG3DSA:3.80.10.107.4E-16785830IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.20.25.808.1E-2210881159IPR003657WRKY domain
PROSITE profilePS5081118.96910931156IPR003657WRKY domain
SuperFamilySSF1182901.31E-2010941159IPR003657WRKY domain
SMARTSM007744.4E-3010981160IPR003657WRKY domain
PfamPF031061.6E-2110991158IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-2512031270IPR003657WRKY domain
PROSITE profilePS5081123.13512041267IPR003657WRKY domain
SuperFamilySSF1182903.01E-2312061271IPR003657WRKY domain
SMARTSM007746.8E-3712091271IPR003657WRKY domain
PfamPF031062.0E-2412101269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1375 aa     Download sequence    Send to blast
MACSESLWTV CALVDAMFRL PKKLDRLLVS HGHMLPRGAE DEIPLIKQDL EKMVAILQEH  60
DDSGAEDHTM MIKCLTTEVR ELSYDMEDSI DQYEHAANSR RGIPPRRNKY KVTRRRGKTT  120
ARLPEKLKWR LWMANKIREF SVRSQEALQR YSLLNHLGGN GISRAAAAST RSDASFGSWH  180
PTPYMELVGI DAPMKNLEAW LGKDGDQKLK VVSVVGSGGV GKTTLANELY RKIGGQFECW  240
AFVRMSRKPD VRRLLISMLS QVRPHQPPHT WKVHSLIANI RTHLQDKRYL IIIDDVWSVS  300
TWDIINHALP DGNLCSGILI TTEIEDAALR CCGYDSKYVF TLKPLGDDDS STLFFNTAFG  360
PQHECPPELN EVSNSIIRKC GGLPLATVAV ASLLVGWIGK LEQWEYANKS LGYSLRTNPT  420
SEGMKQVLNL SYNNLPQHLK ACLMYITIYQ ENYIIQKDDL VKQWIAEGLI CATEDKDMEE  480
ISRSYFDELI SSRMVQPVHI NDNDDVVSCM VHHMIHDFVT HKSLEENFVA AIDHCQTAVT  540
LTDKVRRLSL HFGNAEAMPS PKNMRLSQVR TLAYFGIFKC LPPIVEFGLL QVLILHLWGD  600
DASISFDLTK ISELFRLRYL HVTCNVTLEV PETKMRGLQY LETLKIDARV SAVPSDIVHL  660
PGLLHLSLPV EVHLPDSIGH MTSLCTLAYF DLSVNSIENV QSLSELTNLQ DLRLTSSRVP  720
PWCLKSKMDS MGSILEKLSK LRSLTLEPSS ILNVGLSSMS ICCDELSSVS SPPVLLQRFE  780
WSPHICTFSS IPKWIGHLDK LCILKIGVTQ LARNDVDVLR GLPALTVLSL FVQAKPAERI  840
IFSKMGFSVL KYFKFKCSVP WLEFEAHAMP NLRKLKLGFD AHGTDKHGTV PVGIEHLSGL  900
KEISAKIWVA VADDPARRAA ELALRHAIKM HQARPTFNIQ YVDGIFSGKG DNNSRLQEEE  960
QRTLQKQYEI TEEDSTSEQH GIFQKGSRKD AHSRFSAFSE WKTVSDKQAD SRTHTQRQIE  1020
GMTTGLSSSR SWTKWLKTEA QKEEHRNLQK QYLIMEDSGE QHGVHKYSEN VKKHADNRKT  1080
LPRWKTQVKV TSQNAGVGDD GFIWRKYGQK DSLGAKYSRD YYRCTHRHSR GCQAMKQVQR  1140
TDGNPLLFDV MYAGHHTCTQ GVNVQLQPGQ HDQSSVSVVV NSEGSVLGLE NMQSRMPKRS  1200
KHVRLVAPLD DGFRWRKYGQ KDVLGFKYPR AYYRCLYRQQ QGCPATKQVQ RTDSDPQLFD  1260
VVYHGEHICA QYPATSESQL TCEEVRGSIG GFRSMTPGTS NSQVTEAGSG SGSTVGFPIM  1320
SPAMSESSTY EVVSASPARF WSTPDEVDSM MDDTLDPDLD IFDDFEFPYP PSDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C6e-434652834504Disease resistance RPP13-like protein 4
6j5t_F6e-434652834504Disease resistance RPP13-like protein 4
6j5t_G6e-434652834504Disease resistance RPP13-like protein 4
6j5t_L6e-434652834504Disease resistance RPP13-like protein 4
6j5t_O6e-434652834504Disease resistance RPP13-like protein 4
6j5u_A6e-434652834504Disease resistance RPP13-like protein 4
6j5v_A6e-434652834504Disease resistance RPP13-like protein 4
6j5w_A6e-434652834504Disease resistance RPP13-like protein 4
6j6i_C6e-434652834504Disease resistance RPP13-like protein 4
6j6i_F6e-434652834504Disease resistance RPP13-like protein 4
6j6i_G6e-434652834504Disease resistance RPP13-like protein 4
6j6i_L6e-434652834504Disease resistance RPP13-like protein 4
6j6i_O6e-434652834504Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G202900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161814.10.0putative disease resistance RPP13-like protein 2 isoform X1
TrEMBLA0A453LJ220.0A0A453LJ22_AEGTS; Uncharacterized protein
STRINGMLOC_74974.50.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27511933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-28WRKY family protein