PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G190200.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HD-ZIP

Protein Properties

Length: 238aa MW: 26193.9 Da PI: 4.9362

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G190200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.8	1e-19	28	80	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +f++eq++ Le++F + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k Brast05G190200.1.p 28 KKRFSEEQIKSLESMFSTQAKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 80 568*************************************************9 PP
2	HD-ZIP_I/II	120.8	6.8e-39	27	118	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +k+r+s+eq+k+LE++F+++ kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal ++ e+L+k++ +L ++l+ Brast05G190200.1.p 27 NKKRFSEEQIKSLESMFSTQAKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLERQYAALRDDYDALLQSYESLKKDKLALLDQLE 117 69*************************************************************************************9998 PP HD-ZIP_I/II 93 e 93 + Brast05G190200.1.p 118 K 118 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.13E-19	11	84	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-19	21	82	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.86	22	82	IPR001356	Homeobox domain
SMART	SM00389	1.2E-15	25	86	IPR001356	Homeobox domain
CDD	cd00086	2.73E-16	28	83	No hit	No description
Pfam	PF00046	8.7E-17	28	80	IPR001356	Homeobox domain
PRINTS	PR00031	7.7E-6	53	62	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	57	80	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.7E-6	62	78	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.0E-10	82	123	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MEGEDDGGDW LMPSAGPGGR KGGKDCNKKR FSEEQIKSLE SMFSTQAKLE PRQKLQLARE 60 LGLQPRQVAI WFQNKRARWK SKQLERQYAA LRDDYDALLQ SYESLKKDKL ALLDQLEKLA 120 EMLREPGGGK YGGNAGENAG MKEELVVEDG GAKLYNNSAS EGGKLSLFGD DDDAGLFLRP 180 SSQPAHDGGG FTASGPAEYQ QHSSSSFPFH SSWPSSATEH MTTCSSSQWW EFESLSE*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00650	PBM	Transfer from LOC_Os09g35910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G190200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF145730	1e-111	AF145730.1 Oryza sativa homeodomain leucine zipper protein (Oshox6) mRNA, partial cds.
GenBank	AK059755	1e-111	AK059755.1 Oryza sativa Japonica Group cDNA clone:006-203-C03, full insert sequence.
GenBank	AK103160	1e-111	AK103160.1 Oryza sativa Japonica Group cDNA clone:J033121C04, full insert sequence.
GenBank	CT830847	1e-111	CT830847.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN030P03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003578488.1	1e-129	homeobox-leucine zipper protein HOX6
Swissprot	Q651Z5	4e-86	HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
Swissprot	Q9XH35	4e-86	HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBL	I1IS35	1e-128	I1IS35_BRADI; Uncharacterized protein
STRING	BRADI4G35910.1	1e-129	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7873	34	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	7e-35	homeobox 7

Link Out ? help Back to Top
Phytozome	Brast05G190200.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]