 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Brast05G190200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 238aa MW: 26193.9 Da PI: 4.9362 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Brast05G190200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 61.8 | 1e-19 | 28 | 80 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+ +f++eq++ Le++F + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k
Brast05G190200.1.p 28 KKRFSEEQIKSLESMFSTQAKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 80
568*************************************************9 PP
|
| 2 | HD-ZIP_I/II | 120.8 | 6.8e-39 | 27 | 118 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
+k+r+s+eq+k+LE++F+++ kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+aL++ ydal ++ e+L+k++ +L ++l+
Brast05G190200.1.p 27 NKKRFSEEQIKSLESMFSTQAKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLERQYAALRDDYDALLQSYESLKKDKLALLDQLE 117
69*************************************************************************************9998 PP
HD-ZIP_I/II 93 e 93
+
Brast05G190200.1.p 118 K 118
6 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009738 | Biological Process | abscisic acid-activated signaling pathway |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 238 aa
Download sequence Send
to blast |
MEGEDDGGDW LMPSAGPGGR KGGKDCNKKR FSEEQIKSLE SMFSTQAKLE PRQKLQLARE 60
LGLQPRQVAI WFQNKRARWK SKQLERQYAA LRDDYDALLQ SYESLKKDKL ALLDQLEKLA 120
EMLREPGGGK YGGNAGENAG MKEELVVEDG GAKLYNNSAS EGGKLSLFGD DDDAGLFLRP 180
SSQPAHDGGG FTASGPAEYQ QHSSSSFPFH SSWPSSATEH MTTCSSSQWW EFESLSE*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AF145730 | 1e-111 | AF145730.1 Oryza sativa homeodomain leucine zipper protein (Oshox6) mRNA, partial cds. |
| GenBank | AK059755 | 1e-111 | AK059755.1 Oryza sativa Japonica Group cDNA clone:006-203-C03, full insert sequence. |
| GenBank | AK103160 | 1e-111 | AK103160.1 Oryza sativa Japonica Group cDNA clone:J033121C04, full insert sequence. |
| GenBank | CT830847 | 1e-111 | CT830847.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN030P03, full insert sequence. |
