PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G188400.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 802aa    MW: 85826.8 Da    PI: 5.7602
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G188400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.41.9e-2167122156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ +++t++q++eLe++F+++++p++++r eL+++l+L+ rqVk+WFqNrR+++k
  Brast05G188400.2.p  67 KKRYHRHTPQQIQELEAVFKECPHPDEKQRMELSRRLNLESRQVKFWFQNRRTQMK 122
                         688999***********************************************999 PP
2START168.35.4e-532785044205
                         HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
               START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                         ++a++elvk  ++++p+W  s     e +n+de+++ f++  +     + +ea r++g+ +  +a+lv +l+d + +W e+++    +a+t
  Brast05G188400.2.p 278 LAAMDELVKVTQVDDPLWLPSLdsgfETLNYDEYRRAFARVVGhspagFVSEATREVGIAIVSSADLVDSLMDAA-RWAEMFPcvvaRAST 367
                         789*****************9999**************8865599******************************.*************** PP

                         EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.......-TTSEE-EESSEEEEEEEECT CS
               START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe......sssvvRaellpSgiliepksn 159
                         +e is g      g +qlm aelq+lsplvp R+++f+R+++q+ +g w++vdvS d    p         ++++ ++llpSg+++e++ n
  Brast05G188400.2.p 368 TEIISGGmpgtrsGSIQLMHAELQVLSPLVPiREVTFLRFCKQHAEGLWAVVDVSADGVLRPDGgaangaAAGYMGCRLLPSGCVVEDMRN 458
                         *********************************************************998887777778899******************* PP

                         CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
               START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                         g+skvtwv h+++++  +h l+r+l++sg+a ga++w+a lqrqc+
  Brast05G188400.2.p 459 GYSKVTWVVHAEYDETAVHHLYRPLLRSGQALGARRWLASLQRQCQ 504
                         *********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-2250124IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-2354124IPR009057Homeodomain-like
PROSITE profilePS5007118.30164124IPR001356Homeobox domain
SMARTSM003891.5E-1965128IPR001356Homeobox domain
CDDcd000869.02E-2067124No hitNo description
PfamPF000465.8E-1967122IPR001356Homeobox domain
PROSITE patternPS00027099122IPR017970Homeobox, conserved site
PROSITE profilePS5084839.771266508IPR002913START domain
CDDcd088751.13E-107272504No hitNo description
SuperFamilySSF559611.99E-27273504No hitNo description
SMARTSM002341.7E-36275505IPR002913START domain
PfamPF018522.0E-44278504IPR002913START domain
SuperFamilySSF559612.51E-13579721No hitNo description
SuperFamilySSF559612.51E-13754794No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 802 aa     Download sequence    Send to blast
MSMEGGGPLA GDANRLGLMG SSGSGGDGDS LGRGREDEND SRSGSDNLDG ASGDELDPEN  60
SNPRKKKKRY HRHTPQQIQE LEAVFKECPH PDEKQRMELS RRLNLESRQV KFWFQNRRTQ  120
MKTQIERHEN ALLRQENDKL RAENMTIREA MRSPICGNCG GAAVLGEVSL EEQHLRIENS  180
RLKDELDRVC SLAGKFLGRP ISTITSGLEF GIGAPNGFGA LGPLAGGSSS VLQPIPDLMG  240
GSSAAAMRLP AGISGLDDAE ISGGAIAVDR GVLLELGLAA MDELVKVTQV DDPLWLPSLD  300
SGFETLNYDE YRRAFARVVG HSPAGFVSEA TREVGIAIVS SADLVDSLMD AARWAEMFPC  360
VVARASTTEI ISGGMPGTRS GSIQLMHAEL QVLSPLVPIR EVTFLRFCKQ HAEGLWAVVD  420
VSADGVLRPD GGAANGAAAG YMGCRLLPSG CVVEDMRNGY SKVTWVVHAE YDETAVHHLY  480
RPLLRSGQAL GARRWLASLQ RQCQYLAILC NNSLPSHDNQ AISPVGRRSM LKLAQRMADN  540
FCAGVCATAA QKWRRLDEWR VEGAMPGGGD QRQGGGGGDK EVRMMARQSV GAPGEPPGVV  600
LSATTSVRLP GTPPQRVFDY LRDEQRRGEW DILANGEAMQ EMDHIAKGQL LGNAVSLLRP  660
NATSGNQNNM LILQETCTDS SGSLVVYAPV DVQSMHIVMN GGDSAYVSLL PSGFAILPDG  720
HNTPPAVADP AALSSQQHQQ GSSESAAHGN NNNTGSLVTV AFQILVNNLP TAKLTVESVD  780
TVSNLLSCTI QKIKSALQAS N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16368RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G188400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3657940.0AK365794.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2037M19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003578475.10.0homeobox-leucine zipper protein ROC6
SwissprotQ7Y0V70.0ROC6_ORYSJ; Homeobox-leucine zipper protein ROC6
TrEMBLI1IS180.0I1IS18_BRADI; Uncharacterized protein
STRINGBRADI4G35760.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein