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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G177900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 291aa MW: 32006.9 Da PI: 6.0472 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.3 | 3.2e-09 | 121 | 168 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ Er RR+ri +++ L+ l+P + +k Ka iL + ++Y++sLq Brast05G177900.2.p 121 SHSLSERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 168 799***********************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.08E-11 | 115 | 172 | No hit | No description |
SuperFamily | SSF47459 | 3.14E-17 | 115 | 184 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-16 | 117 | 181 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.396 | 117 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-6 | 121 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.4E-10 | 123 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MAGFSHLPQQ MEYGLTNAGS FMFCHGHVVA ASANPEDAAS LEISSGVLDT PPMATASVEK 60 KRRPCREEHT VSLNSAHSPK EPKENTRKRG GKKQSKEMDE EEEEPKGYIH VRARRGQATD 120 SHSLSERVRR ERISERMRML QALVPGCDKV TGKALILDEI INYVQSLQNQ VEFLSMRIAS 180 LSPVLYGFGM DRDVAFSDQL QKIEGMFHEA AAMPSDSAIN RSSTSPAPSQ AIMDTDTSSS 240 PHYSLQGTNG SMSLSQDNGS SIGYMMQTVG EPKEELFNQV VFSNYMCSFQ * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G177900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238344.2 | 0.0 | transcription factor BEE 1 isoform X1 | ||||
Refseq | XP_010238345.2 | 0.0 | transcription factor BEE 1 isoform X1 | ||||
TrEMBL | A0A0Q3HBX5 | 0.0 | A0A0Q3HBX5_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G34870.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 4e-36 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast05G177900.2.p |