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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G169900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 355aa MW: 39211.4 Da PI: 9.6149 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 176.3 | 8.5e-55 | 25 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv++yL+ k+++ ++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke Brast05G169900.1.p 25 LPPGFRFHPTDEELVTYYLRGKIADGSFTA-RAITEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKE 114 79*************************999.89***************99999************************************** PP NAM 92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +el g+kktLvfykgrap+gek++Wvmheyrl Brast05G169900.1.p 115 IFTGqppaMQELAGMKKTLVFYKGRAPRGEKSNWVMHEYRL 155 **9877777778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-63 | 22 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.909 | 25 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-28 | 26 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MEGSGGGGVV SKKKQDESKK KEESLPPGFR FHPTDEELVT YYLRGKIADG SFTARAITEV 60 DLNKCEPWDL PEKAKMGEKE WYFFSLRDRK YPTGVRTNRA TNAGYWKTTG KDKEIFTGQP 120 PAMQELAGMK KTLVFYKGRA PRGEKSNWVM HEYRLHSKPG SKSNKDEWVV CRIFAKTPGV 180 KKYPSNNAHA RPHHPYTLDM VPQLLPTLMQ HDLFGRGHHP YMSPADLVEL SRFARGTPGL 240 HPHIQPHPGY MNPAASFALS NLNLNLGAPS PATATMPPQH ALHAMSMNQT SVTSQGYQVT 300 TAEHMTPGFG NYVISPNGGD GGGFGAGMTT GGTSIRYQNL DVDQLVEKCW PGSY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-53 | 24 | 182 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-53 | 24 | 182 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-53 | 24 | 182 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-53 | 24 | 182 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-53 | 24 | 182 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-53 | 24 | 182 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00277 | DAP | Transfer from AT2G24430 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G169900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010238320.1 | 0.0 | NAC domain-containing protein 92 | ||||
TrEMBL | I1IRF7 | 0.0 | I1IRF7_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G34157.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9361 | 38 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 4e-86 | NAC domain containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Brast05G169900.1.p |