PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G165100.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 523aa    MW: 57954.1 Da    PI: 7.2301
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G165100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.42.4e-11207239133
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLee 33 
                         e++ k  rr+++NReAAr+sR+RKka+i++Le 
  Brast05G165100.1.p 207 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLES 239
                         6777999************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.6E-7203252No hitNo description
SMARTSM003382.3E-6207296IPR004827Basic-leucine zipper domain
PfamPF001704.1E-8208239IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.002209251IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.63E-7211251No hitNo description
PROSITE patternPS000360214229IPR004827Basic-leucine zipper domain
PfamPF141443.2E-28305378IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MMSAAGSQSQ QQEIIRQHQQ QQQEMEMNIS FGMSSHHHHH HHAPPSSSSS SSMHAAAASF  60
MSAKEAAAAS GAYDQLGELD QALFMYLDHG HGSQHASAHH QEQRQTLNIF PSQPMHVEPS  120
PKGEISLVLS PAPVGSKMPR SSPDHHQQQQ HQMQQAAMEE LAGSRRQQEH HLAVQQHQQP  180
FAAEPAGVSK DVKPLARKDK RSLSTSERDP KTLRRLAQNR EAARKSRLRK KAYIQQLESS  240
RIRLAQIEQE LHSARAQGVF FPGSGLLTEQ GVAGKGLGGI DGLSSEAAMF DVEYGRWQEE  300
HYRVMYELRA ALQQQLPEGE LQMYVENCLA HHDEVVAIKD AVIKGDVFHL ISGVWRSPAE  360
RCFLWLGGFR PSEVIKMVLG HVEPLAEQQI VAVYGLQQSA AETEEALSQG LDALYQSLSD  420
TVVSDALSCP PANVANYMGQ MHVAMNKLST LEGFVRQAEN LRQQTLHRLH QVLTTRQMAR  480
SLLAVSDYFH RLRTLSSLWV TRPRAPQDQH PGAGNGGTPH SS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G165100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3666600.0AK366660.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2045H07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238296.10.0transcription factor TGA2.2 isoform X1
SwissprotQ52MZ21e-163TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLI1IR940.0I1IR94_BRADI; Uncharacterized protein
STRINGBRADI4G33740.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78763543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-143bZIP family protein