PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G164600.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 405aa    MW: 42415.7 Da    PI: 9.3322
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G164600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.6e-12334379655
                         HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +++Er RR +i +++ +L+el+P+      k  + +++L +Av+YIk+Lq
  Brast05G164600.1.p 334 SIAERVRRTKISERIRKLQELVPNM----EKQTNTSDMLDLAVDYIKELQ 379
                         689*********************6....4679****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.907328378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-15331388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.52E-12332383No hitNo description
Gene3DG3DSA:4.10.280.103.9E-15333387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-11334384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9334379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MYGAALPKDL NLPIQLQQPA AGVRTPPQQP MSAPGLLRYR SAPSTLLGDD FLPAAAGAGP  60
DDAVFARFLS GGHRPDIRDD DKPPRPVNSH FPPEVAAAAS MAASQQQLMY QSQQQMAAME  120
AGAALYRTAS SGGGTDHGNS LLLRQSSSPA DFLNHLNMDN GYGNMLRAGM TGAGGGFRNG  180
DAPRLKGQLS FSSSRQGSMM SQISEMVGEE LGGGGSSSAD DEAGSNGGGY GVPAPGGYPM  240
GAAAWDEPSP SPSPSPLLSA DSLQPSGPAA AKRRRGSPGN NGASVPPIVK HQFSLPPSSK  300
ASPEMAAIEK FLQFQDAVPC KIRAKRGCAT HPRSIAERVR RTKISERIRK LQELVPNMEK  360
QTNTSDMLDL AVDYIKELQM QVKVMNNGRA SCTCSASRPK QFAG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G164600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3715041e-128AK371504.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2135O23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010238294.10.0transcription factor bHLH130 isoform X1
TrEMBLI1IR870.0I1IR87_BRADI; Uncharacterized protein
STRINGBRADI4G33670.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-53bHLH family protein