PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G156400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | Dof | ||||||||
Protein Properties | Length: 197aa MW: 20737 Da PI: 8.0325 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 116.4 | 1.1e-36 | 27 | 86 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +a +cprC+s++tkfCyynny+++qPr++C++CrryWtkGG+lrnvPvGg++r n++ss Brast05G156400.1.p 27 AEAEPCPRCESRDTKFCYYNNYNTTQPRHYCRSCRRYWTKGGSLRNVPVGGASRSNNSSS 86 67889***************************************************9887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 4.0E-31 | 29 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.81 | 30 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 32 | 68 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 5.0E-17 | 37 | 78 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MQEPGSRAAP PFAGVDLRRP KGYPAPAEAE PCPRCESRDT KFCYYNNYNT TQPRHYCRSC 60 RRYWTKGGSL RNVPVGGASR SNNSSSSSSP PKRTKNHSKS KRRRVVPQPE PVGTDGSAPA 120 GAATATTEAV ATDDDPAGQP AVETEPSVKL GVGLADAGGK EPGPFEWPSG CDDLGISCWG 180 TGVLADADPA MFLDLP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 104 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00672 | SELEX | Transfer from GRMZM2G009406 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G156400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354149 | 9e-64 | AK354149.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1005F20. | |||
GenBank | AK360934 | 9e-64 | AK360934.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1128K17. | |||
GenBank | AK377058 | 9e-64 | AK377058.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3146P05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003576643.1 | 1e-102 | dof zinc finger protein MNB1A | ||||
Swissprot | P38564 | 2e-47 | MNB1A_MAIZE; Dof zinc finger protein MNB1A | ||||
TrEMBL | I1IR10 | 1e-101 | I1IR10_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G33000.1 | 1e-101 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 3e-22 | DOF zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Brast05G156400.1.p |
Publications ? help Back to Top | |||
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