 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Brast05G153800.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 267aa MW: 28876.9 Da PI: 4.4444 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Brast05G153800.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.2 | 3.2e-19 | 50 | 103 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++++eq+++Le+ Fe ++++ e++++LA+ lgL+ rqV vWFqNrRa++k
Brast05G153800.1.p 50 KKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 103
45689************************************************9 PP
|
| 2 | HD-ZIP_I/II | 133.4 | 8.1e-43 | 49 | 141 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrls+eqv++LE+sFe e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal+ ++++L++++++L +e+
Brast05G153800.1.p 49 EKKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYNALRHSYDALRLDHDALRRDKDALLAEI 139
69**************************************************************************************999 PP
HD-ZIP_I/II 92 ke 93
ke
Brast05G153800.1.p 140 KE 141
87 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MKRPGGGSSS SLLQMANPND MDYGVVEMET EGDAEEEMMA CGGGGGGGEK KRRLSAEQVR 60
ALERSFEVEN KLEPERKARL ARDLGLQPRQ VAVWFQNRRA RWKTKQLERD YNALRHSYDA 120
LRLDHDALRR DKDALLAEIK ELKGKLGDED AAASFTSVKE EPAASDGPPP AGMGSSDSDS 180
SAVVNDTDAT GATKPAELPT PEVGTLLVAP CAAAAAAGHG EVFFHGSFLK VEEDETGFLD 240
DDEPCGGFFA DEPPLAWWTE PTEHWK*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 74 | 80 | ERKARLA |
| 2 | 97 | 105 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. |
| UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. |
| UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK354063 | 0.0 | AK354063.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1004L21. |
| GenBank | AK355887 | 0.0 | AK355887.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1027I19. |
