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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G152000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 286aa MW: 30020.5 Da PI: 7.374 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.2 | 7.2e-32 | 44 | 98 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 kvrY+eClkNhA+ +GghavDGCgEf+++ geegt++al+CaAC CHRnFHRre+ Brast05G152000.1.p 44 KVRYRECLKNHAVGIGGHAVDGCGEFIAA-GEEGTIDALRCAACTCHRNFHRRESP 98 89**************************9.999********************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 7.0E-24 | 38 | 99 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.3E-29 | 45 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.4E-29 | 46 | 96 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.243 | 47 | 96 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.9E-21 | 207 | 281 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.8E-33 | 212 | 282 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.3E-26 | 220 | 276 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MDFDDHDDAD EETMAPMPVS SSHETSPLGG GAEVAPNKPP GGAKVRYREC LKNHAVGIGG 60 HAVDGCGEFI AAGEEGTIDA LRCAACTCHR NFHRRESPSD FPAAAGEGAG ASPLFSPAAY 120 GAMVPHHQFS PYFRTPAGYL HHHHHQHHMA SMAAAAAAGH PPRPLALPST SHSRDDADDL 180 SGGGMAVGPM SAVGPLSSMS LGGGGAGPSG YGSGGSGPGK KRFRTKFTQE QKDRMLAFAE 240 RVGWRIQKHD EAAVQQFCDE VGVKRHVLKV WMHNNKHTLG KKPSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-29 | 221 | 278 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G152000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972655 | 8e-96 | EU972655.1 Zea mays clone 385315 ZF-HD protein dimerisation region containing protein mRNA, complete cds. | |||
GenBank | EU974775 | 8e-96 | EU974775.1 Zea mays clone 457946 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003576623.1 | 1e-147 | zinc-finger homeodomain protein 1 | ||||
Swissprot | A2Z259 | 1e-118 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | I1IQW1 | 1e-146 | I1IQW1_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G32580.1 | 1e-146 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3950 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 2e-55 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Brast05G152000.1.p |