PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G152000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ZF-HD
Protein Properties Length: 286aa    MW: 30020.5 Da    PI: 7.374
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G152000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.27.2e-324498358
         ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                        kvrY+eClkNhA+ +GghavDGCgEf+++ geegt++al+CaAC CHRnFHRre+ 
  Brast05G152000.1.p 44 KVRYRECLKNHAVGIGGHAVDGCGEFIAA-GEEGTIDALRCAACTCHRNFHRRESP 98
                        89**************************9.999********************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-243899IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.3E-294597IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.4E-294696IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.2434796IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.9E-21207281IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-33212282IPR009057Homeodomain-like
TIGRFAMsTIGR015653.3E-26220276IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MDFDDHDDAD EETMAPMPVS SSHETSPLGG GAEVAPNKPP GGAKVRYREC LKNHAVGIGG  60
HAVDGCGEFI AAGEEGTIDA LRCAACTCHR NFHRRESPSD FPAAAGEGAG ASPLFSPAAY  120
GAMVPHHQFS PYFRTPAGYL HHHHHQHHMA SMAAAAAAGH PPRPLALPST SHSRDDADDL  180
SGGGMAVGPM SAVGPLSSMS LGGGGAGPSG YGSGGSGPGK KRFRTKFTQE QKDRMLAFAE  240
RVGWRIQKHD EAAVQQFCDE VGVKRHVLKV WMHNNKHTLG KKPSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-292212781875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G152000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9726558e-96EU972655.1 Zea mays clone 385315 ZF-HD protein dimerisation region containing protein mRNA, complete cds.
GenBankEU9747758e-96EU974775.1 Zea mays clone 457946 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576623.11e-147zinc-finger homeodomain protein 1
SwissprotA2Z2591e-118ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLI1IQW11e-146I1IQW1_BRADI; Uncharacterized protein
STRINGBRADI4G32580.11e-146(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.12e-55homeobox protein 21