PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G142000.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 336aa    MW: 35238.4 Da    PI: 7.4394
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G142000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-18167221256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Brast05G142000.1.p 167 RKKLRLSKEQAAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 221
                         788899***********************************************98 PP
2HD-ZIP_I/II1284.1e-41167257192
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rlskeq+++LEesF+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
  Brast05G142000.1.p 167 RKKLRLSKEQAAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELR-AL 256
                         69*************************************************************************************9.55 PP

         HD-ZIP_I/II  92 k 92 
                         k
  Brast05G142000.1.p 257 K 257
                         5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-18152217IPR009057Homeodomain-like
SuperFamilySSF466891.17E-18155224IPR009057Homeodomain-like
PROSITE profilePS5007117.265163223IPR001356Homeobox domain
SMARTSM003897.0E-16165227IPR001356Homeobox domain
CDDcd000861.43E-16167224No hitNo description
PfamPF000467.2E-16167221IPR001356Homeobox domain
PROSITE patternPS000270198221IPR017970Homeobox, conserved site
PfamPF021831.2E-10223257IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-24223266IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MELGLSLGEA MADAGRELVL GLGVGAGAET GRGRRDQEAV AGARRELGLG AMRCGSSPEP  60
TTMRLALLPL VPSLGFPWPS ESRHLEEAST TRGFDVNRAP STGGSAWACA AEEEQEDTAA  120
VAGAAVSSSP NNSGGSFPMD FGAQGGDGAP GGGSRGGSDE DDGGSSRKKL RLSKEQAAFL  180
EESFKEHSTL NPKQKVALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE YLKRCCETLT  240
EENRRLQKEL AELRALKTVH PFYMHLPATT LSMCPSCERV ASNSAPASSA AAAKAHTAGG  300
IAAAAPEHRP SSFAALFSSA RSFPLSAQPQ APSSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171SRKKLRL
2215223RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G142000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0364471e-156BT036447.1 Zea mays full-length cDNA clone ZM_BFb0114O05 mRNA, complete cds.
GenBankKJ7269111e-156KJ726911.1 Zea mays clone pUT3456 HB transcription factor (HB11) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576587.11e-157homeobox-leucine zipper protein HOX11
SwissprotQ67UE21e-142HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A3B6LN471e-160A0A3B6LN47_WHEAT; Uncharacterized protein
STRINGTraes_5BL_4A3874701.11e-161(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52093363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-70homeobox from Arabidopsis thaliana