 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Brast05G114800.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 318aa MW: 33729.3 Da PI: 4.6733 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Brast05G114800.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.3 | 6.2e-19 | 89 | 143 | 3 | 56 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++++t+eq+++Le+ Fe+ +r++ e++ eLA++lg+ rqV vWFqNrRa++k
Brast05G114800.1.p 89 NKRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGMAPRQVAVWFQNRRARWK 143
67799*************98**********************************9 PP
|
| 2 | HD-ZIP_I/II | 121.8 | 3.3e-39 | 89 | 179 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+d++aL++a+d+l + +++L +++e+Lr ++
Brast05G114800.1.p 89 NKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGMAPRQVAVWFQNRRARWKTKQLERDFDALRAAHDRLLAGRDALLADNESLRLQV 179
79****************9999*****************************************************************9776 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MESGRLMFSS ATPCRAGGGQ MMLFGGSGSF LGGSPAVSGV EDGRRRKRPF LATAMDDDLQ 60
MEEYDDDTYG AYGGVDLDEH APGAGGRANK RRLTAEQVRA LERSFEEEKR KLEPERKSEL 120
ARRLGMAPRQ VAVWFQNRRA RWKTKQLERD FDALRAAHDR LLAGRDALLA DNESLRLQVI 180
SLTEELQAKA SSPVSEPEEH TTASGMVHAG ASAPPALANQ PKESCDACAV ETNAGAGAAG 240
APAIGIAGSS PESHSCFADA RSPPSSSDDD CGGAASSEGG CAFFLPDGAM LEAGAAVERE 300
SEAEAAAQLN YWAWFWN*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 137 | 145 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK356850 | 1e-104 | AK356850.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1041A16. |
| GenBank | CP012617 | 1e-104 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
| GenBank | CT837895 | 1e-104 | CT837895.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA112M06, full insert sequence. |
