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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast05G110300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 281aa MW: 30152.4 Da PI: 6.7231 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.1 | 7.1e-21 | 109 | 158 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g Brast05G110300.1.p 109 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 158 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.59E-30 | 108 | 168 | No hit | No description |
SuperFamily | SSF54171 | 4.51E-23 | 109 | 168 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.5E-35 | 109 | 172 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.3E-33 | 109 | 168 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.354 | 109 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 110 | 121 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.7E-15 | 110 | 158 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-11 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MAAAIDLSGE ELMRALEPFI RDASASPPLH SHPSPTSPFS FPHAAHQGYP YGVQAQAQAE 60 LSPAQMHYIQ ARLHLQRQAG PPGHLGPRAQ PMKPASTAAA ATPPRPQKLY RGVRQRHWGK 120 WVAEIRLPRN RTRLWLGTFD TAEEAALAYD QAAYRLRGDA ARLNFPDNAA SRGPLDASVD 180 AKLQTLCQNI TASKNANKSK SSSAATSSTP TSNCSSPSSD EASSSLESAE SSPSTATNAA 240 EVPEMQQLDF SEAPWDEAAG FALTKYPSYE IDWDSLLATN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 108 | 166 | 4 | 63 | ATERF1 |
3gcc_A | 2e-20 | 108 | 166 | 4 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast05G110300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009075 | 0.0 | BT009075.1 Triticum aestivum clone wip1c.pk004.o24:fis, full insert mRNA sequence. | |||
GenBank | DQ334407 | 0.0 | DQ334407.1 Triticum aestivum drought-responsive factor-like transcription factor DRFL1a (DRFL1a) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003578039.1 | 1e-163 | ethylene-responsive transcription factor RAP2-13 | ||||
TrEMBL | I1IPP6 | 1e-162 | I1IPP6_BRADI; Uncharacterized protein | ||||
STRING | BRADI4G29010.1 | 1e-162 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 3e-35 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast05G110300.1.p |