PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G101400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 323aa    MW: 34839.2 Da    PI: 6.3133
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G101400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.32.7e-27121181158
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                         +dDg++WrKYGqKe+ g+++pr+YYrCt++   gC ++k+++rs+edp++++++Y+g+H++
  Brast05G101400.1.p 121 VDDGHSWRKYGQKEILGAKHPRGYYRCTHRktkGCAATKQLQRSDEDPTLFDVIYHGSHTC 181
                         59***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.515116184IPR003657WRKY domain
SuperFamilySSF1182901.44E-24118184IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.2E-27119183IPR003657WRKY domain
SMARTSM007743.4E-38121183IPR003657WRKY domain
PfamPF031067.6E-26122181IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MECVDSNGGS RLVVTELSHI KELVKQLDVN LGGSPELCKR LAAQIFSVTE RSIGMIRSGH  60
FGKRSAAGLD SPPLSAAPSP LSDVSDMTFK PNKKRKTMER RRHQVRVAPS GEGAADTPPV  120
VDDGHSWRKY GQKEILGAKH PRGYYRCTHR KTKGCAATKQ LQRSDEDPTL FDVIYHGSHT  180
CLLPKAEEEP QNPEALRFLQ SLTVETEGLA AMAGPQSWST TTTITTPFSF SSPAPPPPPE  240
RYSMFSAPST PDNCCFGRGV SVELSPATSG GSTMAAPFRA QSEMDKMVSA LALVAAAEPD  300
VEAAFSLEDF EFDDFDVSSF LA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-21121181868OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G101400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003576431.11e-173WRKY transcription factor 6
TrEMBLI1IPG01e-172I1IPG0_BRADI; Uncharacterized protein
STRINGBRADI4G28280.11e-173(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-32WRKY family protein