PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G094700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 125aa    MW: 14027.7 Da    PI: 5.9876
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G094700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.38.7e-091152148
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaia 48
                        +g++G+r+ + +gr+ A I + +      +r++lg+f+t++ Aa a++a
  Brast05G094700.1.p 11 TGFSGIRRQE-TGRYQAGITCdV------TRWWLGTFDTPDVAAGAHEA 52
                        699****888.9*********55......************99988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.4E-71120IPR017392AP2/ERF transcription factor ERF/PTI6
PROSITE profilePS5103213.9331267IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-121268IPR016177DNA-binding domain
SMARTSM003805.7E-51273IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-131368IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MQPRRRPNST TGFSGIRRQE TGRYQAGITC DVTRWWLGTF DTPDVAAGAH EAEAWRFHHP  60
RPEMNFPDVP DRREAEFLAP ASMWIDRIEE LEHRQQIHAT DMDSSPISVV CMTPLIAPVS  120
VAGG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G094700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1681133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.12e-08ethylene response DNA binding factor 3