PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G067100.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NAC

Protein Properties

Length: 293aa MW: 31332.2 Da PI: 5.2404

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G067100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	61.5	2.6e-19	13	139	5	128
NAM 5 frFhPtdeelvveyLkkkvegkk..leleevikevdiykv.ePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatg 87 +rF+Pt e v +yL + ++g + +e+ i+++d+y eP dL + + kae++ + +fF+ ++++ + r+ ra+ +g+W ++ Brast05G067100.1.p 13 CRFNPTPLEAVAFYLPRLISGGGtlHGAERLIHRADVYGDrEPGDLAAafapAPKAEQRgDRFFFTLCKRQKGSRARSARAAGAGTWTSQQ 103 79***************999875555667**9755*8546663333444477*********************9875 PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + +v ++ g +vg k L f k + ++t Wvm+eyr Brast05G067100.1.p 104 -TSDVEDAAGVKVGEVKNLSFKK----HKKSTGWVMEEYRC 139 .5899999*********83....334799****95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	20.839	9	159	IPR003441	NAC domain
Pfam	PF02365	1.6E-13	13	138	IPR003441	NAC domain
SuperFamily	SSF101941	1.03E-19	14	158	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MEGPLDEELF QLCRFNPTPL EAVAFYLPRL ISGGGTLHGA ERLIHRADVY GDREPGDLAA 60 AFAPAPKAEQ RGDRFFFTLC KRQKGSRARS ARAAGAGTWT SQQTSDVEDA AGVKVGEVKN 120 LSFKKHKKST GWVMEEYRCL LQGAAVDGGE MVLCRIHLSP NACAQAREES AAYLRIQPGR 180 AADQDQTPMP VGKRPADQDQ NPPCPKRARV ALAPMLMTTA AAAGLGDGDA FASSWVEGML 240 AGVGGQDEVV THHAAVVESG DANTGSFNSS LDELLRLATE EEEAEQRQQV LP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G067100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010239526.1	4e-87	uncharacterized protein LOC104585198
TrEMBL	I1IUI4	8e-86	I1IUI4_BRADI; Uncharacterized protein
STRING	BRADI4G43010.1	1e-86	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1832	27	99

Link Out ? help Back to Top
Phytozome	Brast05G067100.1.p