PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G019800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 469aa    MW: 51661.3 Da    PI: 4.5818
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G019800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS216.61.3e-661034652373
                GRAS   2 velLlecAeavssgdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                         ++lLl+ Aeav++gd +la+a+ +rl  l      + +  ++ Rla +f+++L++rl++        +pp e      s++++++++ +e+
  Brast05G019800.1.p 103 TDLLLTGAEAVEAGDSRLATAVFSRLDGLllgipENAAVGSFDRLAYHFAQGLRSRLSS----ANTRCPPPEP---LPSDRMSVQQIIQEL 186
                         689***********************99888764445558******************9....2222333333...369999********* PP

                GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                         sP+ kf+h+taNqaIl+a++g++ vH++D++i++G+QWp+L+  Las   g  s+ +T++   +  s +  ++ ++rL++fA++l++pf++
  Brast05G019800.1.p 187 SPFAKFAHFTANQAILDATKGDSDVHVVDLNIGEGVQWPSLMSDLASH--GGRSFYLTVITTDADYSDDIHQASARRLSEFADSLKLPFQY 275
                         **********************************************95..7789********887799999******************** PP

                GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.adh.nse.....sFlerfleale 262
                         n l+ ++ edl  ++++ + +  ++ ++    +       sl++ r+ +  +vk l+Pk++v+ve+e +   n++     sF + f+eal+
  Brast05G019800.1.p 276 NSLHIHSDEDL--HDFSKSCNGPVIFSCDTTSMPYK----SLSKLRKILPGCVKMLRPKLMVIVEEElVGIgNEAsvcnvSFIDFFFEALH 360
                         **977755555..88888888999999988666554....55554456669****************6444444477888*********** PP

                GRAS 263 yysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                         +++++f+sl++ ++  +     + vEr ++g++i++ v + g   +e +         le+ G  + ++s ++++qa++l+  ++ +g+ v
  Brast05G019800.1.p 361 HFTTVFESLASCFSGGNhgLCLRLVERDMVGPRIQDFVEHYGPVTVEANV-----PGVLETYG--ACEMSASNVAQARMLVGLFN-RGFGV 443
                         *********99988888788999********************9666665.....67888877..788889999***********.***** PP

                GRAS 352 eeesgslvlgWkdrpLvsvSaW 373
                          +e+g lvl+Wk+rpL+svS+W
  Brast05G019800.1.p 444 VHEKGRLVLCWKSRPLTSVSVW 465
                         ********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098530.15576468IPR005202Transcription factor GRAS
PfamPF035144.6E-64103465IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
METMSYPCSP LLSFPTHEES NFFVWSPQVA LHENATIHVD HSTDQQQDCG FLDTMSLDYS  60
NDWHRQDASD VGVFIDCDER ILGPESSDLV AIQEELMEEN SLTDLLLTGA EAVEAGDSRL  120
ATAVFSRLDG LLLGIPENAA VGSFDRLAYH FAQGLRSRLS SANTRCPPPE PLPSDRMSVQ  180
QIIQELSPFA KFAHFTANQA ILDATKGDSD VHVVDLNIGE GVQWPSLMSD LASHGGRSFY  240
LTVITTDADY SDDIHQASAR RLSEFADSLK LPFQYNSLHI HSDEDLHDFS KSCNGPVIFS  300
CDTTSMPYKS LSKLRKILPG CVKMLRPKLM VIVEEELVGI GNEASVCNVS FIDFFFEALH  360
HFTTVFESLA SCFSGGNHGL CLRLVERDMV GPRIQDFVEH YGPVTVEANV PGVLETYGAC  420
EMSASNVAQA RMLVGLFNRG FGVVHEKGRL VLCWKSRPLT SVSVWAPI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-3114346755380Protein SCARECROW
5b3h_A4e-3114346754379Protein SCARECROW
5b3h_D4e-3114346754379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G019800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310552.10.0uncharacterized protein LOC100821863
TrEMBLI1INB50.0I1INB5_BRADI; Uncharacterized protein
STRINGBRADI4G24867.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76843250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-45GRAS family protein