PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G012700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 238aa    MW: 25394.1 Da    PI: 8.9688
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G012700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.62.1e-2250111259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                         dDg++WrKYG K+  +s+fpr YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  Brast05G012700.1.p  50 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKdTSDPPLFSVTYFNHHTCN 111
                         8***************************99999*******876157**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-2338112IPR003657WRKY domain
SuperFamilySSF1182901.57E-2242112IPR003657WRKY domain
PROSITE profilePS5081116.15744113IPR003657WRKY domain
SMARTSM007741.5E-3349112IPR003657WRKY domain
PfamPF031065.6E-2550110IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MALDSVPPYP GDLGSSTARA SAAAGGGRST QHRIRKEERT WTADTYAPYD DGHQWRKYGE  60
KKLSNSNFPR FYYRCTYKND MKCPATKQVQ QKDTSDPPLF SVTYFNHHTC NTTSRPIGSA  120
ADAVEQPCSR KAVSICFGSG AATEQRPAFL TPPSTAALHS PVSRASQPQD RGAYSSQFQW  180
TGASSAAGNA PVKMEADDLT AGGAGSSSSS ITGGGGALSR TLLPIGQSRC IEYFQFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-1550110968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G012700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010237946.11e-134WRKY transcription factor 55 isoform X1
TrEMBLI1INJ41e-132I1INJ4_BRADI; Uncharacterized protein
STRINGBRADI4G25717.11e-133(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-20WRKY DNA-binding protein 55