PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G004400.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 453aa    MW: 50673.8 Da    PI: 5.2193
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G004400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM72.21.3e-22191482128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk.rknratk.....sgyWkat 86 
                         ppGfrF  td el+  +L+ k++g+kl+le ++ ev i+++eP++L +k+  + ++wyfF+k +++ +++  +++r+ +      + Wkat
  Brast05G004400.1.p  19 PPGFRFALTDMELLEVFLRGKIDGRKLPLEVIFFEVPILNWEPHKLARKA-YGVDRWYFFTKWESSPTNKAgEPRRKLHdvvgvPASWKAT 108
                         9****************************77799************8544.46889******9998876542566664433333567**** PP

                 NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         g+++e  +    g+lvg++k L +y g + +    +W+mhey l
  Brast05G004400.1.p 109 GRTQEFSRGpaPGQLVGTRKLLSYYVGGDVH----KWTMHEYVL 148
                         ******997888899**********766655....9******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-2711166IPR003441NAC domain
PROSITE profilePS5100528.76118166IPR003441NAC domain
PfamPF023651.1E-1419148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MKEKKEKEKH EVVPELRFPP GFRFALTDME LLEVFLRGKI DGRKLPLEVI FFEVPILNWE  60
PHKLARKAYG VDRWYFFTKW ESSPTNKAGE PRRKLHDVVG VPASWKATGR TQEFSRGPAP  120
GQLVGTRKLL SYYVGGDVHK WTMHEYVLGD KAQQMDQFVL CTIQEKKHTD AKGKRRERIS  180
DGSNKETPKR KKKTPATVLS AAAGPHEQYH HQLALQEEHI VDAGKLVYDD DGLGEPPLMM  240
PQQYVYQASI EEMKLQGTYG LNQSTLPFNY HQYTSELHQL NAMDPVYALD NQGQQPMWDD  300
DYAGQISSLV NTDDQLCQQP TITQGSYKQS GTSDETSPDS VFEGAESLSY AAPGGGNANG  360
GGDLVFLVNG DLNNYCVGED NLVGNNDGND AAMALPDEEG KQALPMREHS PCGNDICINV  420
TTADAIDRWM YWYEWYTGMH ACTAASNLVS VV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-151517214171NO APICAL MERISTEM PROTEIN
1ut4_B2e-151517214171NO APICAL MERISTEM PROTEIN
1ut7_A2e-151517214171NO APICAL MERISTEM PROTEIN
1ut7_B2e-151517214171NO APICAL MERISTEM PROTEIN
4dul_A2e-151517214171NAC domain-containing protein 19
4dul_B2e-151517214171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173192KRRERISDGSNKETPKRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G004400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318943.11e-127NAC domain-containing protein 26-like
TrEMBLI1INU91e-126I1INU9_BRADI; Uncharacterized protein
STRINGBRADI4G26600.11e-127(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-18NAC domain containing protein 32