PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast05G004300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 533aa    MW: 59891.8 Da    PI: 4.6419
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast05G004300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.44.6e-26671922128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgk.rknratk..sgyWkatgk 88 
                         ppGfrF P+d el++ +L+ k++g+kl+le v+ ev i+++eP++L  ++ + + ++wyfF+kr+ +++++  +++r+ +  ++ Wkatg 
  Brast05G004300.1.p  67 PPGFRFVPSDLELMDVFLQGKIDGRKLPLEVVFFEVPILNWEPHKLVeARKAYGVDRWYFFTKREPSTTNKAgEPRRKLHdvDAAWKATGP 157
                         9****************************888**************7344445788*********99987552566654444899****** PP

                 NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++v++ + ++ g+kk L++y g    g   dW mhey l
  Brast05G004300.1.p 158 LNKVYR-GPAVAGTKKLLTYYVG----GDVGDWSMHEYVL 192
                         *****9.999***********54....5566*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-3158208IPR003441NAC domain
PROSITE profilePS5100530.48966210IPR003441NAC domain
PfamPF023652.4E-1567192IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MVHLEELHQV TGAGSTTTAG SRDDDDGHQQ QQLVVAVNGD GEEKKKEKKK EEKEKHKHEM  60
VPQLRFPPGF RFVPSDLELM DVFLQGKIDG RKLPLEVVFF EVPILNWEPH KLVEARKAYG  120
VDRWYFFTKR EPSTTNKAGE PRRKLHDVDA AWKATGPLNK VYRGPAVAGT KKLLTYYVGG  180
DVGDWSMHEY VLDGMEYQLD EFVLCTIQEK MHRDGKRRKR PAKELLPKRN NKKAAATATA  240
STSQQQQPEQ EETTAYYCDP PPPPLSEQGK YYPYHLAALQ EEEEEEEEGE YPMDQPLLPL  300
LEHGQCYHPQ ASSQEEHAMA FGVDPLGGGY LDGDHHHDYR LVDVATNEED TLAYDGSGVL  360
EPPPLMMPQD QHDSQALQLL EEMDLEYYKQ SFAMDPVYAQ DDDQGQQSMW GQTQISSQVN  420
EYTWHDDHHL YQQPSMPLED IFGCLGSLET SPGSVLQGPE PLSYEKAPSG DDATGDLVLL  480
VNGNNGGKDA ARMALHVCQH GGEVRQKSMD VLVYGGDVVL GSKPISCCYL YL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-166321012168Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast05G004300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024318944.10.0NAC domain-containing protein 13
TrEMBLA0A0Q3ETJ20.0A0A0Q3ETJ2_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI4G26600.11e-131(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44290.11e-20NAC domain containing protein 60