PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast05G002900.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 555aa MW: 60703.8 Da PI: 7.2759

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast05G002900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.6	2.1e-11	248	276	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le Brast05G002900.1.p 248 KTMRRLAQNREAARKSRLRKKAYIQQLES 276 7789***********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0027	242	319	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.09E-6	248	283	No hit	No description
Pfam	PF00170	6.7E-9	248	276	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.3E-7	249	276	No hit	No description
PROSITE pattern	PS00036	0	251	266	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-28	328	402	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence Send to blast
MEEGSSSSGH HHHPRHHSSK DPHQQQVLAG YGAGVVGFHG AAAAMPTTTS SSMPSASFFA 60 EQEEGAGYLG ELEEALMHHH HHHHHQAGGS SSSKNTTTHH LLHQQTGAAA HHSHGHGHNN 120 STMAAMAIPM PFHAGTTATA AAAVRPPPTL DIFPSWPIRP LAPPHHHTPK EGSNVTADST 180 DSESSSKNNN IKHSPDHQKG LAVSMPMASQ FHQISQQQQN HQQRQHHHQQ KMATTLSDRT 240 GKALDPNKTM RRLAQNREAA RKSRLRKKAY IQQLESGKIR LAQLELDLNR ARSQGLLLGG 300 APGGNCSADA AMFDAEYSRW LDDDSRRMIE LRGGLHAHLP DSDLRAIVDD ALTHYNELFR 360 LKDTTARTDV FHLITGMWAT PAERCFLWIG GFRPSDMLKT LVPQLDPLTE QQVGGICSLR 420 QSLQQAEEAL TQGLEQLHQS LADTVAGSGS LADDTNMGSF LGDMALALGK LSNLENFVIQ 480 ADNLRLQTLH QMHRILTVRQ AARCFLAIGE YHNRLRALSS LWASRPREIM MADEGNCGEL 540 SIAAHPSESQ YAAF*

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence Send to blast

MEEGSSSSGH HHHPRHHSSK DPHQQQVLAG YGAGVVGFHG AAAAMPTTTS SSMPSASFFA  60
EQEEGAGYLG ELEEALMHHH HHHHHQAGGS SSSKNTTTHH LLHQQTGAAA HHSHGHGHNN  120
STMAAMAIPM PFHAGTTATA AAAVRPPPTL DIFPSWPIRP LAPPHHHTPK EGSNVTADST  180
DSESSSKNNN IKHSPDHQKG LAVSMPMASQ FHQISQQQQN HQQRQHHHQQ KMATTLSDRT  240
GKALDPNKTM RRLAQNREAA RKSRLRKKAY IQQLESGKIR LAQLELDLNR ARSQGLLLGG  300
APGGNCSADA AMFDAEYSRW LDDDSRRMIE LRGGLHAHLP DSDLRAIVDD ALTHYNELFR  360
LKDTTARTDV FHLITGMWAT PAERCFLWIG GFRPSDMLKT LVPQLDPLTE QQVGGICSLR  420
QSLQQAEEAL TQGLEQLHQS LADTVAGSGS LADDTNMGSF LGDMALALGK LSNLENFVIQ  480
ADNLRLQTLH QMHRILTVRQ AARCFLAIGE YHNRLRALSS LWASRPREIM MADEGNCGEL  540
SIAAHPSESQ YAAF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast05G002900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003576364.1	0.0	transcription factor TGAL4 isoform X1
Refseq	XP_014758844.1	0.0	transcription factor TGAL4 isoform X1
Refseq	XP_014758845.1	0.0	transcription factor TGAL4 isoform X1
Refseq	XP_014758846.1	0.0	transcription factor TGAL4 isoform X1
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A0Q3PJP7	0.0	A0A0Q3PJP7_BRADI; Uncharacterized protein
STRING	BRADI4G26670.3	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4444	36	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-137	bZIP family protein

Link Out ? help Back to Top
Phytozome	Brast05G002900.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]