PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G315700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 344aa    MW: 36547.1 Da    PI: 6.1876
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G315700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_163.73.3e-20248310163
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                         e+elk+++rk +NRe+ArrsR+RK+ae+eeL +++++L+ eN++L+ ele+ kke+++l+ ++
  Brast04G315700.1.p 248 ERELKKQKRKLSNRESARRSRLRKQAECEELGQRAEVLKLENSSLRAELERVKKEYEELRLKN 310
                         89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.5E-25196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165969.9E-25124230No hitNo description
Gene3DG3DSA:1.20.5.1703.5E-14246307No hitNo description
SMARTSM003381.1E-18248312IPR004827Basic-leucine zipper domain
PfamPF001706.3E-19248310IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.875250313IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.38E-10251307No hitNo description
CDDcd147024.03E-25253303No hitNo description
PROSITE patternPS000360255270IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGSNDPSTPS KASKVPEQEQ PPATTSGTTA PVYPEWPGFQ GYPAMPPHGF FPPPVAAGQA  60
HPYMWGTQHM VPPYGTPPPP YMMYPPGTVY AHPSTPGVHP FHYPVPTNGN LDPAGAAPGA  120
SEMNGKNEPG KTSGPSANGI TSNSESGSDS ESEGSDANSQ NDSHSKENDV NENGSSQNGV  180
SHSSSHGIFN KTMPLVPVQS GAVIGGVAGP ATNLNIGMDY WGATGSSPLP AMRGKVPSGS  240
VRGEQWDERE LKKQKRKLSN RESARRSRLR KQAECEELGQ RAEVLKLENS SLRAELERVK  300
KEYEELRLKN ASLKEKLGEA GDSVPDMNEQ SDTNGGSHQQ KEP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1250257LKKQKRKL
2264270RRSRLRK
3264271RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G315700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankWHTHBP1A0.0M28704.1 Wheat sequence-specific DNA binding protein mRNA, complete cds.
GenBankX567810.0X56781.1 T.aestivum 1a-17 gene for HBP-1a (leucine zipper type transcription factor).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316435.10.0uncharacterized protein LOC100826051
SwissprotP239220.0HBP1A_WHEAT; Transcription factor HBP-1a
TrEMBLI1HWT20.0I1HWT2_BRADI; Uncharacterized protein
STRINGBRADI3G02730.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.13e-49basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Tabata T,Nakayama T,Mikami K,Iwabuchi M
    HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat.
    EMBO J., 1991. 10(6): p. 1459-67
    [PMID:2026143]
  2. Tabata T, et al.
    A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif.
    Science, 1989. 245(4921): p. 965-7
    [PMID:2772648]
  3. Mikami K, et al.
    Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants.
    Mol. Gen. Genet., 1995. 248(5): p. 573-82
    [PMID:7476857]
  4. Nakayama T,Okanami M,Meshi T,Iwabuchi M
    Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain.
    Mol. Gen. Genet., 1997. 253(5): p. 553-61
    [PMID:9065688]
  5. Okanami M,Meshi T,Tamai H,Iwabuchi M
    HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain.
    Genes Cells, 1996. 1(1): p. 87-99
    [PMID:9078369]