PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G314200.3.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

BES1

Protein Properties

Length: 685aa MW: 76689.6 Da PI: 7.2338

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G314200.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	155	5.6e-48	101	243	4	144
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspess 93 g++++++E+E++k+RER+RR i+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r + +pl +++ g+ + +s e++ Brast04G314200.3.p 101 GEREREREKERTKLRERHRRSITSRMLAGLRQHGNFPLPARADMNDVLAALARAAGWTVQPDGTTFRSSPQPLlPPPAQFGALQVTSMETP 191 67899******************************************************************9999999****999 PP DUF822 94 lq.sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvls 144 ++l+s+a+ +p++s+ + +++++++spssl+s+ +a+++ + + Brast04G314200.3.p 192 ALaNALNSYAIGTPLDSQTSALQTDDSLSPSSLNSVVVAEQSIKNENYGNSC 243 98899*******************************99844444333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	9.2E-48	101	250	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
Gene3D	G3DSA:3.20.20.80	6.0E-166	256	679	IPR013781	Glycoside hydrolase, catalytic domain
SuperFamily	SSF51445	1.27E-159	257	677	IPR017853	Glycoside hydrolase superfamily
Pfam	PF01373	5.7E-82	267	639	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.0E-51	282	296	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.0E-51	303	321	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.0E-51	325	346	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.0E-51	418	440	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.0E-51	491	510	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.0E-51	525	541	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.0E-51	542	553	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.0E-51	560	583	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	3.0E-51	598	620	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence Send to blast
MFGLGQLCYI SIPASGLHSS LRFLAGSVGG RPSSPAALAS ADRRRRLRRA AMSTKHPHAH 60 PRDADPAASP PPAPPSRRAR GGFASSTPAA PAPPATTRRR GEREREREKE RTKLRERHRR 120 SITSRMLAGL RQHGNFPLPA RADMNDVLAA LARAAGWTVQ PDGTTFRSSP QPLLPPPAQF 180 GALQVTSMET PALANALNSY AIGTPLDSQT SALQTDDSLS PSSLNSVVVA EQSIKNENYG 240 NSCSANSLNC IGSDQMGIIN CYCQLVDPEA LRAELRHLKS LNVDGVIVDC WWGVVEAWTP 300 QKYEWSGYRD LFGIIKEFRL KVQVVLSFHG SGECESGDLL ISLPRWVMEI AQENQDIFFT 360 DREGRRNTEC LSWGIDKERV LRGRTGIEVY FDFMRSFHME FRSLSEEGLV SAIEIGLGAS 420 GELRYPACTK KMGWRYPGIG EFQCYDRYMQ KNLRQSALKR GHLFWARGPD NAGYYNSRSH 480 ETGFFCDGGD YDSYYGRFFL NWYSGILVDH VDQVLSLATL AFDGAEIVVK IPSIYWWYRT 540 ASHAAELTAG FYNPTNRDGY SPVFRMLKKH SVILKLVCYG PEFTVQENDE AFADPEGLTW 600 QVMNAAWDHG LSLSVESALP CLDGEMYPQI LDIAKPRNDP DRHHVSFFAY RQQPPFLLQR 660 YVCFSELETF VKCMHGEDTQ NFID*

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence Send to blast

MFGLGQLCYI SIPASGLHSS LRFLAGSVGG RPSSPAALAS ADRRRRLRRA AMSTKHPHAH  60
PRDADPAASP PPAPPSRRAR GGFASSTPAA PAPPATTRRR GEREREREKE RTKLRERHRR  120
SITSRMLAGL RQHGNFPLPA RADMNDVLAA LARAAGWTVQ PDGTTFRSSP QPLLPPPAQF  180
GALQVTSMET PALANALNSY AIGTPLDSQT SALQTDDSLS PSSLNSVVVA EQSIKNENYG  240
NSCSANSLNC IGSDQMGIIN CYCQLVDPEA LRAELRHLKS LNVDGVIVDC WWGVVEAWTP  300
QKYEWSGYRD LFGIIKEFRL KVQVVLSFHG SGECESGDLL ISLPRWVMEI AQENQDIFFT  360
DREGRRNTEC LSWGIDKERV LRGRTGIEVY FDFMRSFHME FRSLSEEGLV SAIEIGLGAS  420
GELRYPACTK KMGWRYPGIG EFQCYDRYMQ KNLRQSALKR GHLFWARGPD NAGYYNSRSH  480
ETGFFCDGGD YDSYYGRFFL NWYSGILVDH VDQVLSLATL AFDGAEIVVK IPSIYWWYRT  540
ASHAAELTAG FYNPTNRDGY SPVFRMLKKH SVILKLVCYG PEFTVQENDE AFADPEGLTW  600
QVMNAAWDHG LSLSVESALP CLDGEMYPQI LDIAKPRNDP DRHHVSFFAY RQQPPFLLQR  660
YVCFSELETF VKCMHGEDTQ NFID*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-114	256	677	20	444	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G314200.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233755.2	0.0	beta-amylase 8 isoform X2
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A0Q3HI58	0.0	A0A0Q3HI58_BRADI; Beta-amylase
STRING	BRADI3G02800.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.2	0.0	beta-amylase 2

Link Out ? help Back to Top
Phytozome	Brast04G314200.3.p

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]