PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G314200.2.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

BES1

Protein Properties

Length: 710aa MW: 79371.7 Da PI: 7.3733

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G314200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	155	5.3e-48	101	243	4	144
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspess 93 g++++++E+E++k+RER+RR i+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r + +pl +++ g+ + +s e++ Brast04G314200.2.p 101 GEREREREKERTKLRERHRRSITSRMLAGLRQHGNFPLPARADMNDVLAALARAAGWTVQPDGTTFRSSPQPLlPPPAQFGALQVTSMETP 191 67899******************************************************************9999999****999 PP DUF822 94 lq.sslkssalaspvesysaspksssfpspssldsislasaasllpvlsvls 144 ++l+s+a+ +p++s+ + +++++++spssl+s+ +a+++ + + Brast04G314200.2.p 192 ALaNALNSYAIGTPLDSQTSALQTDDSLSPSSLNSVVVAEQSIKNENYGNSC 243 98899*******************************99844433333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	9.8E-48	101	250	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
Gene3D	G3DSA:3.20.20.80	6.9E-170	269	704	IPR013781	Glycoside hydrolase, catalytic domain
SuperFamily	SSF51445	7.85E-163	269	702	IPR017853	Glycoside hydrolase superfamily
Pfam	PF01373	5.4E-82	292	664	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.0E-51	307	321	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.0E-51	328	346	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.0E-51	350	371	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.0E-51	443	465	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.0E-51	516	535	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.0E-51	550	566	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.0E-51	567	578	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.0E-51	585	608	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	4.0E-51	623	645	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence Send to blast
MFGLGQLCYI SIPASGLHSS LRFLAGSVGG RPSSPAALAS ADRRRRLRRA AMSTKHPHAH 60 PRDADPAASP PPAPPSRRAR GGFASSTPAA PAPPATTRRR GEREREREKE RTKLRERHRR 120 SITSRMLAGL RQHGNFPLPA RADMNDVLAA LARAAGWTVQ PDGTTFRSSP QPLLPPPAQF 180 GALQVTSMET PALANALNSY AIGTPLDSQT SALQTDDSLS PSSLNSVVVA EQSIKNENYG 240 NSCSANSLNC IGSDQLMRAS AVSAGDYTRT PYIPVYASLP MGIINCYCQL VDPEALRAEL 300 RHLKSLNVDG VIVDCWWGVV EAWTPQKYEW SGYRDLFGII KEFRLKVQVV LSFHGSGECE 360 SGDLLISLPR WVMEIAQENQ DIFFTDREGR RNTECLSWGI DKERVLRGRT GIEVYFDFMR 420 SFHMEFRSLS EEGLVSAIEI GLGASGELRY PACTKKMGWR YPGIGEFQCY DRYMQKNLRQ 480 SALKRGHLFW ARGPDNAGYY NSRSHETGFF CDGGDYDSYY GRFFLNWYSG ILVDHVDQVL 540 SLATLAFDGA EIVVKIPSIY WWYRTASHAA ELTAGFYNPT NRDGYSPVFR MLKKHSVILK 600 LVCYGPEFTV QENDEAFADP EGLTWQVMNA AWDHGLSLSV ESALPCLDGE MYPQILDIAK 660 PRNDPDRHHV SFFAYRQQPP FLLQRYVCFS ELETFVKCMH GEDTQNFID*

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence Send to blast

MFGLGQLCYI SIPASGLHSS LRFLAGSVGG RPSSPAALAS ADRRRRLRRA AMSTKHPHAH  60
PRDADPAASP PPAPPSRRAR GGFASSTPAA PAPPATTRRR GEREREREKE RTKLRERHRR  120
SITSRMLAGL RQHGNFPLPA RADMNDVLAA LARAAGWTVQ PDGTTFRSSP QPLLPPPAQF  180
GALQVTSMET PALANALNSY AIGTPLDSQT SALQTDDSLS PSSLNSVVVA EQSIKNENYG  240
NSCSANSLNC IGSDQLMRAS AVSAGDYTRT PYIPVYASLP MGIINCYCQL VDPEALRAEL  300
RHLKSLNVDG VIVDCWWGVV EAWTPQKYEW SGYRDLFGII KEFRLKVQVV LSFHGSGECE  360
SGDLLISLPR WVMEIAQENQ DIFFTDREGR RNTECLSWGI DKERVLRGRT GIEVYFDFMR  420
SFHMEFRSLS EEGLVSAIEI GLGASGELRY PACTKKMGWR YPGIGEFQCY DRYMQKNLRQ  480
SALKRGHLFW ARGPDNAGYY NSRSHETGFF CDGGDYDSYY GRFFLNWYSG ILVDHVDQVL  540
SLATLAFDGA EIVVKIPSIY WWYRTASHAA ELTAGFYNPT NRDGYSPVFR MLKKHSVILK  600
LVCYGPEFTV QENDEAFADP EGLTWQVMNA AWDHGLSLSV ESALPCLDGE MYPQILDIAK  660
PRNDPDRHHV SFFAYRQQPP FLLQRYVCFS ELETFVKCMH GEDTQNFID*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-119	272	702	11	444	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G314200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010233755.2	0.0	beta-amylase 8 isoform X2
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A0Q3HI58	0.0	A0A0Q3HI58_BRADI; Beta-amylase
STRING	BRADI3G02800.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Link Out ? help Back to Top
Phytozome	Brast04G314200.2.p

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]