PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G307600.2.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 1143aa    MW: 127438 Da    PI: 6.3517
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G307600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.22.6e-22131232199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae++      +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F   
  Brast04G307600.2.p 131 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIFV-- 218
                         99******************************9999986.*************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         ++++++l+++++r+
  Brast04G307600.2.p 219 RDEKQQLLLGIRRA 232
                         5688889****997 PP
2Auxin_resp116.22.8e-38257340183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m  ete+  +rr++Gt++g+sdldpvrW+nS+WrsL+
  Brast04G307600.2.p 257 AAHAAANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMTCETEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 340
                         79*********************************989********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-41120260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-39123246IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-18130222No hitNo description
PfamPF023623.6E-20131232IPR003340B3 DNA binding domain
SMARTSM010191.1E-21131233IPR003340B3 DNA binding domain
PROSITE profilePS5086311.448131233IPR003340B3 DNA binding domain
PfamPF065071.6E-33257340IPR010525Auxin response factor
PfamPF023091.9E-810071094IPR033389AUX/IAA domain
PROSITE profilePS5174527.38410091093IPR000270PB1 domain
SuperFamilySSF542772.26E-610271088No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1143 aa     Download sequence    Send to blast
MAQAPASCEA AAVPGEGERR AAAINGELWH ACAGPLVSLP PVGSLVVYFP QGHSEQVAAS  60
MQKDVEAQVP NYPNLPSKLI CLLHSVILQA DPDTDEVYAQ MTLQPVNTYA KEALQLSELA  120
LRQARPQMEF FCKTLTASDT STHGGFSVPR RAAEKIFPSL DFSLQPPCQE LQARDIHDNV  180
WTFRHIFRGQ PKRHLLTTGW SLFVSGKKLF AGDSVIFVRD EKQQLLLGIR RANRQPTNIS  240
SSVLSSDSMH IGVLAAAAHA AANTSPFTIF YNPRASPTEF VIPFAKYQKA MYSNQISLGM  300
RFRMTCETEE LGTRRYMGTI TGISDLDPVR WKNSQWRSLQ VGWDESAAGE RRNRVSIWEI  360
EPLAAPFFIC PQPFFGVKRP RQLDDESSEM ENLWKRAMPW LGEEVCIKDA QTQSATIPGL  420
SLVQWMNMNR QQSSSLASTS LQSEYLRSAS NPAIQNFGAA DLARQLYMQN HLLQQSSIHL  480
NSPNLHQQVK SINDLSKETH SLDQLGAIRK QQDQNQDGAS QQRQQQSSNQ VVPLSQAQTN  540
IVQAQVILQN QMQQQQQQQQ QQQQQSSPTQ NQQGVSGQQL LQSHQQQDQN LQLQQQLLLQ  600
QQLKQQQQQQ QEQHQQQQQQ QQQLNKLPGQ LANLASQQTK LSDQELHLQL MQKLQQHSLM  660
SQSAVTLSRL PLIQDQPKFL VDMQQQLSNS DSLARQVIPQ QEERRTSLQT AKVPPLMQQE  720
QQHRLSKKQV APADVSEAAF TPISSSSVVS KTGNTMINSR AAQSALTEEM PSCSTSPSTA  780
NGNHLAQPNI SRNEHCRIST EKVPHSTVQM LIPTSIEAVT PIVTKELPKL NSNVIPSVTT  840
SKLPNVVSGL QNFMHNIVPT DNLETASSAT SLWPSQTDGL LHQGFPSSNF NQHQMFKDAL  900
PDVEIQGVDP SSSALFEMNN DGPLGFPMET EGLLGNALDS VKYQNYISTD DENNYRMQKD  960
ARQEISTSMV SQSFGQSDMA FNSIDSAIND GALLNRNSWP PGPPPQRMRT FTKVYKRGAV  1020
GRSIDIGKYS GYGELNQALA RMFGIEGQLE DRQRIGWKLV YTDHEDDVLL LGDDPWEEFV  1080
NCVRCIRILS PQEVQQMSLD GDLGNTVLPN QACSSSDGGN AWRPRCDQNS RNPSIGPFDQ  1140
FE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1622036147388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G307600.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155071.10.0auxin response factor 5-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLM0YUJ90.0M0YUJ9_HORVV; Auxin response factor
STRINGMLOC_73144.40.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19