 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Brast04G301100.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 232aa MW: 25211.4 Da PI: 10.64 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Brast04G301100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.2 | 5.7e-18 | 96 | 151 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
r+k+ ++t+eq Lee F+ ++ +s+ e+++LA++l+L rqV vWFqNrRa+ k
Brast04G301100.1.p 96 RKKKLRLTEEQAALLEESFRAHNVLSHGEKQDLARRLRLRARQVEVWFQNRRARTK 151
79999*************************************************98 PP
|
| 2 | HD-ZIP_I/II | 107.9 | 7.3e-35 | 97 | 185 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
+kk+rl++eq++lLEesF++++ L++ +K++lar+L+l++rqv+vWFqnrRARtk+kq+E d++ L+r + +l+++n+ L++e +eLr+
Brast04G301100.1.p 97 KKKLRLTEEQAALLEESFRAHNVLSHGEKQDLARRLRLRARQVEVWFQNRRARTKLKQTELDCDLLRRLCGRLTHDNALLRRELAELRS 185
59*************************************************************************************96 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 232 aa
Download sequence Send
to blast |
MSSVSTISSG AMGMAMEDSP PDQEQLVDTR LSLFSGAGMI SRPPPQPAQA LLPRAAEAPP 60
AGKRKRNKGS KQNEIRAAAM QHSDVEDDDD QGGARRKKKL RLTEEQAALL EESFRAHNVL 120
SHGEKQDLAR RLRLRARQVE VWFQNRRART KLKQTELDCD LLRRLCGRLT HDNALLRREL 180
AELRSSAAGS SSISAGSSSS SSSRLTAWNS DKCPSCSKVA GRTSYGAGLS L*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 94 | 99 | RRKKKL |
| 2 | 94 | 100 | RRKKKLR |
| 3 | 145 | 153 | RRARTKLKQ |
