PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G301100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 232aa    MW: 25211.4 Da    PI: 10.64
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G301100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.7e-1896151156
                         TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         r+k+ ++t+eq   Lee F+ ++ +s+ e+++LA++l+L  rqV vWFqNrRa+ k
  Brast04G301100.1.p  96 RKKKLRLTEEQAALLEESFRAHNVLSHGEKQDLARRLRLRARQVEVWFQNRRARTK 151
                         79999*************************************************98 PP

2HD-ZIP_I/II107.97.3e-3597185189
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                         +kk+rl++eq++lLEesF++++ L++ +K++lar+L+l++rqv+vWFqnrRARtk+kq+E d++ L+r + +l+++n+ L++e +eLr+
  Brast04G301100.1.p  97 KKKLRLTEEQAALLEESFRAHNVLSHGEKQDLARRLRLRARQVEVWFQNRRARTKLKQTELDCDLLRRLCGRLTHDNALLRRELAELRS 185
                         59*************************************************************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-1879151IPR009057Homeodomain-like
SuperFamilySSF466896.42E-1881154IPR009057Homeodomain-like
PROSITE profilePS5007117.68693153IPR001356Homeobox domain
SMARTSM003891.2E-1395157IPR001356Homeobox domain
PfamPF000462.2E-1596151IPR001356Homeobox domain
CDDcd000866.34E-796154No hitNo description
PROSITE patternPS000270128151IPR017970Homeobox, conserved site
SMARTSM003401.8E-9153196IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSSVSTISSG AMGMAMEDSP PDQEQLVDTR LSLFSGAGMI SRPPPQPAQA LLPRAAEAPP  60
AGKRKRNKGS KQNEIRAAAM QHSDVEDDDD QGGARRKKKL RLTEEQAALL EESFRAHNVL  120
SHGEKQDLAR RLRLRARQVE VWFQNRRART KLKQTELDCD LLRRLCGRLT HDNALLRREL  180
AELRSSAAGS SSISAGSSSS SSSRLTAWNS DKCPSCSKVA GRTSYGAGLS L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19499RRKKKL
294100RRKKKLR
3145153RRARTKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G301100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570938.23e-74putative homeobox-leucine zipper protein HOX26
TrEMBLI1HX947e-73I1HX94_BRADI; Uncharacterized protein
STRINGBRADI3G03970.11e-73(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70920.12e-19homeobox-leucine zipper protein 18