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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G297100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 120aa MW: 13169.2 Da PI: 11.7914 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.3 | 1.9e-13 | 20 | 69 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 +g++GV++ + +gr++A+ + r ++ +lg+f++a eAa++++aa+ +l+g+ Brast04G297100.1.p 20 TGFRGVCRQP-SGRYRAQ---TK----RlgATLHLGTFDSAREAARRYDAAAVRLRGA 69 69*******9.7******...52....234*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.62E-15 | 20 | 75 | No hit | No description |
Pfam | PF00847 | 3.7E-9 | 20 | 68 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 14.895 | 21 | 76 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-14 | 21 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-14 | 21 | 77 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-15 | 22 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 22 | 33 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-6 | 58 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MVATEEAAAG RRRKKKKDRT GFRGVCRQPS GRYRAQTKRL GATLHLGTFD SAREAARRYD 60 AAAVRLRGAK AITNFKFKRQ SPPPRVTAAP NDGETMDFGG FPEVPAELRL LPFGILQLP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 10 | 16 | RRRKKKK |
2 | 10 | 17 | RRRKKKKD |
3 | 11 | 16 | RRKKKK |
4 | 11 | 17 | RRKKKKD |
5 | 12 | 17 | RKKKKD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G297100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010236663.1 | 1e-48 | ethylene-responsive transcription factor 9 | ||||
TrEMBL | I1I690 | 2e-47 | I1I690_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G33670.1 | 4e-48 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP37218 | 2 | 3 |
Link Out ? help Back to Top | |
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Phytozome | Brast04G297100.1.p |