PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G296900.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 368aa    MW: 38431.6 Da    PI: 4.8783
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G296900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.52.9e-124088356
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        ++GV  +++ gr++A+I+dp+    ++  slg+fg ae+Aa+a++aa+ +l+g+
  Brast04G296900.1.p 40 FRGV--RPQGGRYRAQIWDPKG---QTMASLGSFGAAEDAARAYDAAAIALRGA 88
                        89**..699**********943...4999**********************985 PP
2AP245.71.7e-14235286155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         sg++GV++ ++  ++ A+I+dp++   r+  +lg+f+ aeeAaka++aa+ +l+g
  Brast04G296900.1.p 235 SGFRGVYQSSNGSKYNARIWDPVQ---RAGRWLGTFDAAEEAAKAYDAAAVSLYG 286
                         79********9999*******765...59*********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.3E-1839101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-173995IPR001471AP2/ERF domain
PROSITE profilePS5103214.213995IPR001471AP2/ERF domain
PfamPF008471.2E-44087IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-124095IPR016177DNA-binding domain
PfamPF008471.7E-6235286IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-16235294IPR016177DNA-binding domain
SMARTSM003802.8E-21236300IPR001471AP2/ERF domain
PROSITE profilePS5103216.871236294IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-18237294IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAVEHDDDDG GAESQSVASV ANNNKKKTAK KDPADARTEF RGVRPQGGRY RAQIWDPKGQ  60
TMASLGSFGA AEDAARAYDA AAIALRGAAA QTNFKSPAVA AAPLADDDID APVHGVGPKK  120
EAPVVVMNSK SVQGRREEEA AAAAPLADDD IDAPVHGVGP KKEAPVVVMN SKSVQGRREE  180
EAAAAAPLAD DDIDAHAHEI GPKKKMKAPV AVMNSKSGVQ GGGEAAARAR PISRSGFRGV  240
YQSSNGSKYN ARIWDPVQRA GRWLGTFDAA EEAAKAYDAA AVSLYGARAI TNFEQPPPTA  300
VANDGAESSP PLELLNDFPA LTAPVFSESL IPGPKVDGHL TDLPPADWQQ QVHELLHDID  360
FTDDVLA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G296900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024316478.11e-101AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A0Q3F1K91e-100A0A0Q3F1K9_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5011622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.28e-06cytokinin response factor 2