PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G296700.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family AP2
Protein Properties Length: 458aa    MW: 49624.7 Da    PI: 8.8871
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G296700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.34.3e-144088255
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr++   g+++A+I+d         +  ++g+f+taeeAa+a++aa+ +l+g
  Brast04G296700.1.p 40 EYRGVRRR--GGKYRAQIWDaK-----GqTMAWIGSFDTAEEAARAYDAAAIALRG 88
                        59***854..6*********55.....3499***********************98 PP
2AP226.31.9e-08147200155
                 AP2   1 sgykGVrwdkkrgr..WvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         sg++GV++  +     + A+I+dp++   r+r +lg+f+ ae+Aa a+++a+  l+g
  Brast04G296700.1.p 147 SGFRGVYRSVSLSGskYIARIWDPVQ---RARRRLGTFDAAEDAAGAYDEAAVGLYG 200
                         7999997665433346*******765...5999******************976665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-84088IPR001471AP2/ERF domain
PROSITE profilePS5103215.4354096IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-174092IPR001471AP2/ERF domain
SMARTSM003801.3E-1440100IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-124191IPR016177DNA-binding domain
CDDcd000186.41E-15147208No hitNo description
SuperFamilySSF541714.58E-13147208IPR016177DNA-binding domain
PROSITE profilePS5103215.606148208IPR001471AP2/ERF domain
SMARTSM003802.1E-15148214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-15149208IPR001471AP2/ERF domain
PROSITE profilePS5103211.061250319IPR001471AP2/ERF domain
SMARTSM003807.0E-5266325IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-13283319IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-7283319IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MAVERDGDGE PQSVAAVTRK KRKKKKTKKK KKGLPEVRTE YRGVRRRGGK YRAQIWDAKG  60
QTMAWIGSFD TAEEAARAYD AAAIALRGTA AESPLADDDD IDAHVHEVGP RRKKKKKKAP  120
VAPLDSKSVQ GEREAEATRA TKSTPRSGFR GVYRSVSLSG SKYIARIWDP VQRARRRLGT  180
FDAAEDAAGA YDEAAVGLYG ARAVTNFEQP PPPTAAEPSP PVGLLSEFPE LTAPDFSESL  240
IPGPLPDDLL TAGLPPAEWQ RQVHELLRGM DFTAAALGLR STAQTMVWLG SFDAADEAAR  300
AHDAAAVNLC GAAAKTNFTS PAAAPVSAAD DDDDIDEHSL APRPAAACTR AGASTWRGFG  360
TRRGKPSCGS GPSAPPRRAY DEAAVRLYGA RGVTNFEQLR RRCCRWRRRV VVHGPPQDLN  420
DFLEMSPPDF LSDSVIIPGG VRLDDFWDDL LLEEWQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11831RKKRKKKKTKKKKK
21923KKRKK
32028KRKKKKTKK
4110116RRKKKKK
5111117RKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G296700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236272.11e-78ethylene-responsive transcription factor ABI4
TrEMBLA0A0Q3LLQ73e-77A0A0Q3LLQ7_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3720423