PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Brast04G293600.1.p

Organism

Brachypodium stacei

Taxonomic ID

1071399

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

C3H

Protein Properties

Length: 435aa MW: 49944.5 Da PI: 9.5735

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Brast04G293600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5e-06	11	35	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC +r+G+C + ++C+FaHgp Brast04G293600.1.p 11 YKTKLCA-LFRNGHCDR-ESCSFAHGP 35 9****.7777*.*****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	3.7E-12	5	42	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.1E-5	9	39	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0016	10	35	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.803	10	36	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MLPPPRRGPA YKTKLCALFR NGHCDRESCS FAHGPDELRR PPSSRPSFPP HHAGRRDYRG 60 GDFRGRIERR FSPRRRHSPG RDFRGHRSLH NRRPTSRERE SSFSRSPSRK SDRRHEKKTD 120 DGETNSPKSL SVSDNSDMKK DKFSSGDEKE DHEKKLKQIR LDMEALREDK SHLEIVLDEK 180 IDEMRKISSK VNDLDQQLQR EKNECLRMTQ KMKKFIKAHG RFLKAQEDLK RSQARFERLG 240 DLLASDILKR GANEEVSSVH ADEDLNGPYE RSPNTAVTKK RSIPYSTSDE AKAAKKRRDR 300 DSDTITRSDK YRSEGDAADF DKTSKGSEAT KSIYLKKRLW EDEKNKLGNV VSSADKVKDS 360 PVKHALPSTG MAAHALYDLN EAIELDDRHE TIDALLENDA DDRTRSPVMP PQPPPVVRNA 420 YEQYEDLDEE VDVD*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MLPPPRRGPA YKTKLCALFR NGHCDRESCS FAHGPDELRR PPSSRPSFPP HHAGRRDYRG  60
GDFRGRIERR FSPRRRHSPG RDFRGHRSLH NRRPTSRERE SSFSRSPSRK SDRRHEKKTD  120
DGETNSPKSL SVSDNSDMKK DKFSSGDEKE DHEKKLKQIR LDMEALREDK SHLEIVLDEK  180
IDEMRKISSK VNDLDQQLQR EKNECLRMTQ KMKKFIKAHG RFLKAQEDLK RSQARFERLG  240
DLLASDILKR GANEEVSSVH ADEDLNGPYE RSPNTAVTKK RSIPYSTSDE AKAAKKRRDR  300
DSDTITRSDK YRSEGDAADF DKTSKGSEAT KSIYLKKRLW EDEKNKLGNV VSSADKVKDS  360
PVKHALPSTG MAAHALYDLN EAIELDDRHE TIDALLENDA DDRTRSPVMP PQPPPVVRNA  420
YEQYEDLDEE VDVD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	278	297	KKRSIPYSTSDEAKAAKKRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Brast04G293600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003574819.1	0.0	zinc finger CCCH domain-containing protein 13 isoform X1
Swissprot	Q6H7U2	0.0	C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBL	I1HXH1	0.0	I1HXH1_BRADI; Uncharacterized protein
STRING	BRADI3G04650.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3882	29	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	7e-27	C3H family protein

Link Out ? help Back to Top
Phytozome	Brast04G293600.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]