PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G290300.5.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 927aa    MW: 102390 Da    PI: 5.715
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G290300.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.8e-24139240199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F  
  Brast04G290300.5.p 139 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVLFI- 226
                         99*****************************86555544..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Brast04G290300.5.p 227 -WNDNNQLLLGIRRA 240
                         .7777778**99997 PP
2Auxin_resp120.61.2e-39265348183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  Brast04G290300.5.p 265 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 348
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-48124268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-42131254IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-20138239No hitNo description
PROSITE profilePS5086312.971139241IPR003340B3 DNA binding domain
PfamPF023623.2E-22139240IPR003340B3 DNA binding domain
SMARTSM010191.2E-24139241IPR003340B3 DNA binding domain
PfamPF065071.5E-34265348IPR010525Auxin response factor
SuperFamilySSF542772.88E-8785870No hitNo description
PROSITE profilePS5174524.692794878IPR000270PB1 domain
PfamPF023092.4E-5840880IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 927 aa     Download sequence    Send to blast
MKLSPSAGGG LPDQPGSPED DFPFSVAEEH KCLNSELWHA CAGPLVSLPA VGSRVLYFPQ  60
GHSEQVSAST NKEIESQIPN YPNLPPQLIC QLHNVTMHAD AETDEVCAQM TLQPLSPELK  120
DPFLPAELGT ANKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF TQQPPAQELM  180
AKDLHGNEWK FRHIFRGQPK RHLLTTGWSV FISAKRLVAG DSVLFIWNDN NQLLLGIRRA  240
NRPQTVMPSS VLSSDSMHIG LLAAAAHAAS TNSRFTIFYN PRASPSEFVI PLAKYVKAVY  300
HTRISVGMRF RMLFETEESS VRRYMGTITG ISDLDPARWP NSHWRSVKVG WDESTAGERQ  360
PRVSLWEIEP LTTIPMYSSP FPMRLKRPWP TGLPSLYGAK EDDLTSSLMW LRDGASPGFQ  420
SFNFGGLGMN PWMQPRLDSS LLGLQPDMYQ AISAAALQNP AKQVSPSVLQ FQQPQNIAGR  480
SLVSSQILQQ VQPQFQQMHH QNINDNTIQG HNQSEYLQQQ LQCCQSFNGQ KPQEQQQQES  540
HQQQQSQCVQ TPQHQQMQEQ NHSPNFQSVP NALSVFSQLS PSTQSPPSIM QTVSAFSQQQ  600
NFQDTDINSL SPSNISSMHD TLRPFPSEAG SNLQDVPRTT PVPVSDPWSS KRVAMESVIP  660
SQSHVTSSHI EQLDSAPSNI PQSSSLAPLP GRECVVDQDG NSDHQNHLLF GVNIDSQSLL  720
MQDGIPGLQN DNGCIASLQD DNDSNTIPYS TCNFLSPSQN NFPLNEALTS SGCLDVSGYV  780
PFSENPGQVN RPPATFVKVY KSGAVGRLLD ITRFSSYHEL RSELGHLFGL EGQLEDPVRS  840
GWQLVFVDRE NDVLLVGDDP WQEFVNSVSC IKILSPQEVQ QMGKQGIELL SSAPARRLGN  900
SCDNYVSRQE SRNLSTGIAA VGSVEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1593336951388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G290300.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233861.10.0auxin response factor 6 isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0Q3J5G60.0A0A0Q3J5G6_BRADI; Auxin response factor
STRINGBRADI3G04920.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]