PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G290300.3.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 922aa    MW: 101809 Da    PI: 5.8862
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G290300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.7e-24134235199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F  
  Brast04G290300.3.p 134 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVLFI- 221
                         99*****************************86555544..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Brast04G290300.3.p 222 -WNDNNQLLLGIRRA 235
                         .7777778***9997 PP
2Auxin_resp120.61.2e-39260343183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  Brast04G290300.3.p 260 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 343
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-48119263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.2E-42126249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-20133234No hitNo description
SMARTSM010191.2E-24134236IPR003340B3 DNA binding domain
PfamPF023623.1E-22134235IPR003340B3 DNA binding domain
PROSITE profilePS5086312.971134236IPR003340B3 DNA binding domain
PfamPF065071.5E-34260343IPR010525Auxin response factor
SuperFamilySSF542772.81E-8780865No hitNo description
PROSITE profilePS5174524.692789873IPR000270PB1 domain
PfamPF023092.4E-5835875IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 922 aa     Download sequence    Send to blast
MKLSPSAGGG LPDQPGSPEV AEEHKCLNSE LWHACAGPLV SLPAVGSRVL YFPQGHSEQV  60
SASTNKEIES QIPNYPNLPP QLICQLHNVT MHADAETDEV CAQMTLQPLS PQELKDPFLP  120
AELGTANKQP TNYFCKTLTA SDTSTHGGFS VPRRAAEKVF PPLDFTQQPP AQELMAKDLH  180
GNEWKFRHIF RGQPKRHLLT TGWSVFISAK RLVAGDSVLF IWNDNNQLLL GIRRANRPQT  240
VMPSSVLSSD SMHIGLLAAA AHAASTNSRF TIFYNPRASP SEFVIPLAKY VKAVYHTRIS  300
VGMRFRMLFE TEESSVRRYM GTITGISDLD PARWPNSHWR SVKVGWDEST AGERQPRVSL  360
WEIEPLTTIP MYSSPFPMRL KRPWPTGLPS LYGAKEDDLT SSLMWLRDGA SPGFQSFNFG  420
GLGMNPWMQP RLDSSLLGLQ PDMYQAISAA ALQNPAKQVS PSVLQFQQPQ NIAGRSLVSS  480
QILQQVQPQF QQMHHQNIND NTIQGHNQSE YLQQQLQCCQ SFNGQKPQEQ QQQESHQQQQ  540
SQCVQTPQHQ QMQEQNHSPN FQSVPNALSV FSQLSPSTQS PPSIMQTVSA FSQQQNFQDT  600
DINSLSPSNI SSMHDTLRPF PSEAGSNLQD VPRTTPVPVS DPWSSKRVAM ESVIPSQSHV  660
TSSHIEQLDS APSNIPQSSS LAPLPGRECV VDQDGNSDHQ NHLLFGVNID SQSLLMQDGI  720
PGLQNDNGCI ASLQDDNDSN TIPYSTCNFL SPSQNNFPLN EALTSSGCLD VSGYVPFSEN  780
PGQVNRPPAT FVKVYKSGAV GRLLDITRFS SYHELRSELG HLFGLEGQLE DPVRSGWQLV  840
FVDRENDVLL VGDDPWQEFV NSVSCIKILS PQEVQQMGKQ GIELLSSAPA RRLGNSCDNY  900
VSRQESRNLS TGIAAVGSVE F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1591136440388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G290300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575362.10.0auxin response factor 6 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0Q3J5G60.0A0A0Q3J5G6_BRADI; Auxin response factor
STRINGBRADI3G04920.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]