PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G290300.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ARF
Protein Properties Length: 928aa    MW: 102518 Da    PI: 5.715
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G290300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.36.8e-24140241199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F  
  Brast04G290300.1.p 140 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVLFI- 227
                         99*****************************86555544..8************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++ +l+++++r+
  Brast04G290300.1.p 228 -WNDNNQLLLGIRRA 241
                         .7777778**99997 PP
2Auxin_resp120.61.2e-39266349183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  Brast04G290300.1.p 266 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 349
                         79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-48125269IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.3E-42132255IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-20139240No hitNo description
SMARTSM010191.2E-24140242IPR003340B3 DNA binding domain
PfamPF023623.2E-22140241IPR003340B3 DNA binding domain
PROSITE profilePS5086312.971140242IPR003340B3 DNA binding domain
PfamPF065071.5E-34266349IPR010525Auxin response factor
SuperFamilySSF542772.88E-8786871No hitNo description
PROSITE profilePS5174524.692795879IPR000270PB1 domain
PfamPF023092.4E-5841881IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 928 aa     Download sequence    Send to blast
MKLSPSAGGG LPDQPGSPED DFPFSVAEEH KCLNSELWHA CAGPLVSLPA VGSRVLYFPQ  60
GHSEQVSAST NKEIESQIPN YPNLPPQLIC QLHNVTMHAD AETDEVCAQM TLQPLSPQEL  120
KDPFLPAELG TANKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FTQQPPAQEL  180
MAKDLHGNEW KFRHIFRGQP KRHLLTTGWS VFISAKRLVA GDSVLFIWND NNQLLLGIRR  240
ANRPQTVMPS SVLSSDSMHI GLLAAAAHAA STNSRFTIFY NPRASPSEFV IPLAKYVKAV  300
YHTRISVGMR FRMLFETEES SVRRYMGTIT GISDLDPARW PNSHWRSVKV GWDESTAGER  360
QPRVSLWEIE PLTTIPMYSS PFPMRLKRPW PTGLPSLYGA KEDDLTSSLM WLRDGASPGF  420
QSFNFGGLGM NPWMQPRLDS SLLGLQPDMY QAISAAALQN PAKQVSPSVL QFQQPQNIAG  480
RSLVSSQILQ QVQPQFQQMH HQNINDNTIQ GHNQSEYLQQ QLQCCQSFNG QKPQEQQQQE  540
SHQQQQSQCV QTPQHQQMQE QNHSPNFQSV PNALSVFSQL SPSTQSPPSI MQTVSAFSQQ  600
QNFQDTDINS LSPSNISSMH DTLRPFPSEA GSNLQDVPRT TPVPVSDPWS SKRVAMESVI  660
PSQSHVTSSH IEQLDSAPSN IPQSSSLAPL PGRECVVDQD GNSDHQNHLL FGVNIDSQSL  720
LMQDGIPGLQ NDNGCIASLQ DDNDSNTIPY STCNFLSPSQ NNFPLNEALT SSGCLDVSGY  780
VPFSENPGQV NRPPATFVKV YKSGAVGRLL DITRFSSYHE LRSELGHLFG LEGQLEDPVR  840
SGWQLVFVDR ENDVLLVGDD PWQEFVNSVS CIKILSPQEV QQMGKQGIEL LSSAPARRLG  900
NSCDNYVSRQ ESRNLSTGIA AVGSVEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1583337051388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G290300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003575362.10.0auxin response factor 6 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A0Q3J5G60.0A0A0Q3J5G6_BRADI; Auxin response factor
STRINGBRADI3G04920.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]