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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G265600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 233aa MW: 24170.3 Da PI: 9.1237 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.6 | 4.5e-08 | 32 | 57 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ Brast04G265600.2.p 32 KTRLCNKYNTAEGCKWGDKCHFAHGE 57 8***********************96 PP | |||||||
2 | zf-CCCH | 35.3 | 2e-11 | 198 | 223 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +f + G C +GdrC+FaHg+ Brast04G265600.2.p 198 FKTKLCENFTK-GSCTFGDRCHFAHGE 223 69*********.*************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-14 | 27 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-8 | 29 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.075 | 30 | 58 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.069 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-5 | 32 | 57 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 3.8E-14 | 96 | 172 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.4E-8 | 100 | 170 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.487 | 101 | 165 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 9.7E-15 | 101 | 169 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 9.62E-13 | 103 | 165 | No hit | No description |
Pfam | PF00013 | 1.2E-10 | 103 | 166 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 2.1E-16 | 196 | 228 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-9 | 197 | 228 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 17.009 | 197 | 224 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.2E-8 | 197 | 223 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-9 | 198 | 223 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSNLGGPTFA HPPGRMPTGP AGPDGPPTPT VKTRLCNKYN TAEGCKWGDK CHFAHGEREL 60 GKHTFIDSSV PPHMGSRPTS HFAPPAMHNP GMVAPASFGA SATAKISVDG SLAGAIIGRG 120 GINTKQISRV TGAKLAIRDH ESDDSLKNIE LEGTFDQIKN ASAMVTDLIV SISGNNAPPP 180 AKNPAAVSHR GGGPGGNFKT KLCENFTKGS CTFGDRCHFA HGENELRKLA AV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G265600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003571204.1 | 1e-160 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q7F8R0 | 1e-121 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | I1HYA3 | 1e-159 | I1HYA3_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G06940.1 | 1e-160 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-54 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast04G265600.2.p |