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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Brast04G263100.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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| Family |
GRAS |
| Protein Properties |
Length: 401aa MW: 42436.8 Da PI: 5.7104 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Brast04G263100.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 288.2 | 2.3e-88 | 30 | 400 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93
l+l+cA ++ gdl+ a++l r a p+g++ Rla++f++AL a ++ +++ + +s++ +++ss ++aa+ +++++ P+l+f
Brast04G263100.1.p 30 ALVLACAGLLHRGDLAGARRLADRALSAADPRGEASDRLAHHFARALLALDNGGSPSPVP--VASSSVPSSSSPTAAAYLAYNKIAPFLRF 118
6889*******************************************9998883333332..2333333458888899999********** PP
GRAS 94 shltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp...egpp.slRiTgvgspesgskeeleetgerLakfAeelgvpf 176
+hltaNqaIlea+ ++ + +Hi+D+d+ +G+QWp+LlqaL +R+ ++pp ++R+Tg g+ ++++l +tg+rL+ fA+++++pf
Brast04G263100.1.p 119 AHLTANQAILEAFFSDrphpRVLHIVDLDAAHGVQWPPLLQALRDRAaaaDDPPlEVRVTGAGP----DRDALLRTGNRLRAFAASIDLPF 205
*************9887886677***********************988855666*********....9********************** PP
GRAS 177 efnvlvakrledl..eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerfleale. 262
+f++lv + + eL+++p +E+laVn+v+ lhrl ++++l+ +L vks++P vv+++e+e + + ++ +r++ a++
Brast04G263100.1.p 206 RFHPLVIPCPGAAsaSGLELELHPgEETLAVNCVFFLHRLS-NDAELAT----FLGWVKSMNPAVVTIAEREGSSePADELPRRVAAAMDf 291
*****8875555500555667777999*************7.5555555....*******************9997899**********74 PP
GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352
yy+a+fd+lea++++ s er vE+e+lgrei vv +g+ ++ +e W ++ + aG++p p s +aa+qa+lllr ++ s+gy e
Brast04G263100.1.p 292 YYAAVFDALEATVAPGSAERLAVEEEILGREIDAVVDGRGEG----NRGFEAWAAAARGAGLSPRPASAFAAAQARLLLRLHYpSEGYAAE 378
7899********************************999998....99******************************************* PP
GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
e +g+ +lgW++r+L+svS+W+
Brast04G263100.1.p 379 EAHGACFLGWQRRTLMSVSSWQ 400
*********************6 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 401 aa
Download sequence Send
to blast |
MLGPPEPDDD DATASASPPR HHGPDPTPRA LVLACAGLLH RGDLAGARRL ADRALSAADP 60
RGEASDRLAH HFARALLALD NGGSPSPVPV ASSSVPSSSS PTAAAYLAYN KIAPFLRFAH 120
LTANQAILEA FFSDRPHPRV LHIVDLDAAH GVQWPPLLQA LRDRAAAADD PPLEVRVTGA 180
GPDRDALLRT GNRLRAFAAS IDLPFRFHPL VIPCPGAASA SGLELELHPG EETLAVNCVF 240
FLHRLSNDAE LATFLGWVKS MNPAVVTIAE REGSSEPADE LPRRVAAAMD FYYAAVFDAL 300
EATVAPGSAE RLAVEEEILG REIDAVVDGR GEGNRGFEAW AAAARGAGLS PRPASAFAAA 360
QARLLLRLHY PSEGYAAEEA HGACFLGWQR RTLMSVSSWQ *
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}. |
| Publications
? help Back to Top |
- Li X, et al.
Control of tillering in rice.
Nature, 2003. 422(6932): p. 618-21
[PMID:12687001] - Sun F, et al.
Identification and functional analysis of the MOC1 interacting protein 1.
J Genet Genomics, 2010. 37(1): p. 69-77
[PMID:20171579] - Sanyal A, et al.
Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
Mol. Biol. Evol., 2010. 27(11): p. 2487-506
[PMID:20522726] - Yan WH, et al.
A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
Mol Plant, 2011. 4(2): p. 319-30
[PMID:21148627] - Xu C, et al.
Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
Nat Commun, 2012. 3: p. 750
[PMID:22434193] - Lin Q, et al.
Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
Nat Commun, 2012. 3: p. 752
[PMID:22434195] - Liang WH,Shang F,Lin QT,Lou C,Zhang J
Tillering and panicle branching genes in rice.
Gene, 2014. 537(1): p. 1-5
[PMID:24345551] - Zhang B, et al.
Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
Sci Rep, 2015. 5: p. 12211
[PMID:26197925]
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