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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Brast04G243800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | ERF | ||||||||
Protein Properties | Length: 246aa MW: 25573.6 Da PI: 6.3945 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.2 | 4.3e-18 | 44 | 91 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa++ Brast04G243800.1.p 44 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALV 91 57*****998.**********843...6*********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-12 | 44 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.40E-20 | 44 | 102 | No hit | No description |
SMART | SM00380 | 5.6E-36 | 45 | 108 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-21 | 45 | 102 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.117 | 45 | 102 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.3E-31 | 45 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-10 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-10 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MPEREVCSSP ASSSGGSGGA TSSSSPPASP TKRRRAREDG GGQPSYRGVR MRAWGKWVSE 60 IREPRKKSRI WLGTFPTPEM AARAHDAAAL VVKGPSAVLN FPGLAPALPR PASSSPRDVQ 120 AAAVRAAAMD MGHHQPAAAA ALSSPLSPSS APAAMMPQPA AISDAVDDLD AIFELPRLDD 180 DAGAGHVSSG GLTMADHHQR SWCDPVWMDD AQEDLFGFGF GLDAAVDQYH GWGAPSSVSA 240 LLWNL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 45 | 102 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Brast04G243800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004857 | 2e-83 | AP004857.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1711_D06. | |||
GenBank | AP014958 | 2e-83 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY258281 | 2e-83 | AY258281.1 Oryza sativa (japonica cultivar-group) CR223 putative AP2 domain-containing protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010234077.2 | 1e-102 | ethylene-responsive transcription factor ERF039 | ||||
TrEMBL | I1HZ03 | 1e-100 | I1HZ03_BRADI; Uncharacterized protein | ||||
STRING | BRADI3G08790.1 | 1e-101 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 8e-27 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Brast04G243800.1.p |