PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G241500.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family BES1
Protein Properties Length: 381aa    MW: 39296.4 Da    PI: 9.5016
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G241500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822175.82.2e-54161242106
              DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl....eeaeaagssasa 88 
                         ++ r ptw+ErEnn+rRERrRRaiaaki++GLR++Gny lpk++DnneVlkALc eAGw+ve+DGttyrkg+kp+    ++ +   +s s 
  Brast04G241500.1.p  16 AASRVPTWRERENNRRRERRRRAIAAKIFSGLRSYGNYTLPKHCDNNEVLKALCDEAGWTVEPDGTTYRKGCKPPtaaeRAGDLLAHSGSP 106
                         6789**********************************************************************95554445566678889 PP

              DUF822  89 spesslqsslkssalasp 106
                         sp+ss+q s+++s+ +s 
  Brast04G241500.1.p 107 SPCSSYQVSPRASSSSSH 124
                         999999977776666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056878.9E-5417150IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MAGMMGGAGA AGSGMAASRV PTWRERENNR RRERRRRAIA AKIFSGLRSY GNYTLPKHCD  60
NNEVLKALCD EAGWTVEPDG TTYRKGCKPP TAAERAGDLL AHSGSPSPCS SYQVSPRASS  120
SSSHITLGPG GGYFGGGVEG SSLIPWLKNL SSSSSSNIAS SSKYPGGGHH HNYYFNGGSI  180
SAPVTPPTGS PPRTPRFKRG WGEYPGAQVQ PPWAGAGSSG GYGYGYNYAS LPNSTPPSPG  240
GRKKNFIAPD PAWLAGFQIS SAGPSSPTYN LMAPQNPFVA VREAAAAAAA ATAGSSRMYT  300
PGQSGACSPV VGGPLVIRGD TQMADRAAAD DFAFGNGGGN VRVPGLLKAW EGERIHEESA  360
SDELELTLGN SSTRAGADHA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A6e-231989372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B6e-231989372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C6e-231989372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D6e-231989372442Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G241500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1012293e-74AK101229.1 Oryza sativa Japonica Group cDNA clone:J033031H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571150.20.0protein BZR1 homolog 3
SwissprotQ5Z9E51e-129BZR3_ORYSJ; Protein BZR1 homolog 3
TrEMBLA0A0Q3J7R20.0A0A0Q3J7R2_BRADI; Uncharacterized protein
STRINGBRADI3G08967.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.16e-59BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]