PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast04G217800.1.p
Organism
Brachypodium stacei
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 750aa    MW: 86947.5 Da    PI: 7.8992
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast04G217800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.32.1e-17142223191
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         +fY+++A  +GF +r+ +++++      +k +  C+++gk ++ ++   +++r+++    +C+ak+ vk++ +++we+t +++eHnH+l+p
  Brast04G217800.1.p 142 RFYSTHALLTGFAIRRGSNYRR------KKFHILCNRSGKLKPIQHM--QRKRKSNAMGSQCQAKVIVKLT-NEQWEITAVRSEHNHPLCP 223
                         5********************9......456799*********9887..88888888999***********.9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.1E-15142223IPR004330FAR1 DNA binding domain
PfamPF105516.5E-32345437IPR018289MULE transposase domain
PROSITE profilePS509669.124627663IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MTDPDRVAEL NQSGAEQHEG KEPVGKQAMP EGRLQPIGEN YQEQASNVGI ITGLLTDKSD  60
KQTNLVDHSP QHAEEQDQSH DITEWNEMSS NDTSSGSDSD SSSGSELDTE LGKSFYPSFE  120
ALENSRPPEV GMKFPTLEDA ERFYSTHALL TGFAIRRGSN YRRKKFHILC NRSGKLKPIQ  180
HMQRKRKSNA MGSQCQAKVI VKLTNEQWEI TAVRSEHNHP LCPRPSLTRF FLNHRYLSTE  240
EKSFLRVLQQ SRINPKKAMK IFRRMRSNFR NVPSKEKDMS NLQCLEQWRK ENSDVETALK  300
RFKELELRNL GFSYTMQTDE DNIVRSLFWT DARSRVDYEI FGDFVSFDTT YSTNRHNMPF  360
APIVGMNNHG RTLVFGCALL QDQKPETFKW MFQTFLHVMG GKMPRAIITD QDEGMSKAIS  420
EVMPQVKHRL CKFNVMRKAR EKLEVFMAAR GNMNAELHGL VDNSLTEQEF EDGWAELVDK  480
YDAGENEHLR LMWETRKNWA PVYFRAHFYP FIESTGHHEG ANLLFKENVL PKDRIEKFIE  540
QYERIQENIV KTDEDDILHS GTEPAYFSYQ PIEKHAAQIY TRQIFLRIQK ELFYSTAFNV  600
HEIQGGSVYR LEKVCHYENP EVDRNSFEVR VEAGTFSFKC QCAKFTRGGI LCCHIFRVFT  660
QLGINEIPAQ YILPRWTLRF KEEQVKEYKD KCLKKTENTA RYAMLMSKMA DIGKGISVDG  720
AKCSGFMHEL DKIQERLATT GDIRRKSRK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182187QRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapBrast04G217800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755557.10.0protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A0Q3F4K20.0A0A0Q3F4K2_BRADI; Uncharacterized protein
STRINGBRADI3G10422.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.24e-84FAR1-related sequence 3